Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre16g04871 | ATGTTGGAAAAGACTAGTTTGGATGAAGATATTACTTCAACTGAGATGACAGGGTCGGCAAGTCATCATCCACCAGTTCCAGAAGGTTCTGAAAATGTTCAAGACATGGCTGAAATGAACCAGCAGAATTCAAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATATGCTTATGTTTGTTGGTACTTTAAGTGCTGTTGGGAATGGAATCTCTATGCCTTTAATGACTATAATTATCGGAGATGCTCTTGATGCTTTTGGAGGAAATGTTAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCCCTCAAGTTTGCAATCATGGGTGCATGCACTTTTTTTGCAGTGTTTCTACGAGAGATACAGTCTGCAAGAATACGAGCATTATACCTAAAAGCGATTTTACGGCAAGATATCAGTTTTTTTGATACAGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTATGTGTCATGTTTTTTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTTTAACCCTTATCCTTCTATCGTCTCTCCCTCTTCTTGTCCTCTCTGGTTCATTAATGAGCTTTGCATATGCAATGATGGCTTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAATCGGTTCAATTCGAACAGTTGCATCATTTACCGGCGAAAAGCAAGCTATAGCTCAATACAATATATCCTTATCTAAATCTTATAGAATTGGCGTGCAAGAAGGACTAGCTATTGGTTTAGGCCTCGGTACAGTTCGTTTATTTGTTTATTGCACTTATGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACTGGAGGTGAAGTCATAAGTGTATTTTTTGCAATACTAACAGGTTCCATGTCTCTAGGACAGGCATCTCCATGTTTAACCGCATTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGCAATCGATGCTTATGATACGACTGGACGAAAGCTTGATGACATTCGCGGAGACATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATCTCAATATCAAGTGGCACTACCGCGGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCGACGGTTATAAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATTGATAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCAGTTCTCTTTGCTGGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGCTGCAACCGATGAAGAAATCAGAGCTGCAGCCGAATTTGCTAATGCTGCTAACTTCATTGATAAATTCCCGCATGGACTTGAAACAATGGTCGGCGAGCACGGTGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTTGATGAAGCAACAAGCGCACTTGATGCAGAATCTGAAAGATTAGTACAAGAGACACTAGACAGAATTATGATAAACCGAACAACTATCATCATCGCCCACCGTCTTAGCACAATAAGGAATGTTGACAGCGTTGCAGTTATTCACCAAGGGAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAAAAAGGATTCATCCGAACAGTATGATGCTAATGACTCAGATAAGCTAGAAAACTTTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTTTAAGCCGTGGATCATCAGGGATAGGAAAAAGAAGTGACAACTCATTCCGAGTATCAAATTCTATTCCTACCACACTAGTAAAAGGAGCTGAAGTTGTTCCTTCAAATTCAGCATCATCACATATAAGTAAAACTCAAGATGTCCCAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTATTACTCATAGGGACTCTAGCTGCAGCAGTTATCGGAGCAATACTACCTATTGTGGGATTTCTAACCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTCAAGACTCAAAGTTTTGGTCACTAATATTTGTTTCCCTTAGTGTGGCTTGCTTCGCTTTTCATCCATTAAGGTCCTACTTTTTTGCGGTTGCTGGTTCGAAATTGATAAAAAGGATCCGCTTGATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTGCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAACTTTGGTTGGCGATGCACTTGGTTTGCTTGTTCAAGATATTTCTACAGTTATTACAGCCTTGGTAATTTCCTTTGAGGCGAATTGGCAGCTTTCTCTCATCATTATTGTTTTGTTACCTCTACTATTTGTAAATGGACATTTTCAAATTAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAAGGATGCAGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAAGAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTTAGTGGAATTGGTTTTGGCATATCAAACTTCTTTTTGTTTTGTGTCTATGCATGCAGTTTTTATGCTGGCGCCCAACTTGTTGAGAAGGGAAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACTATGGCAGCTGTCGCAATAGCTCAATCCGGCTTCACGGCACCAGGAGCTAGTAAAGCAAAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGAGAGATAGAGTTTCACAATGTCGCTTTCAAGTATCCAACTAGACCCGATGTTCATATATTCAAAAAGCTTTCCTTAACCATTCGTTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGACTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAACAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCCGGAGGACAGAAGCAACGCGTAGCAATTGCGAGAGCCATAGTGAACAGTCCAAGAATATTACTATTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGACAGAACAACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAACAAGGGTGGTACCTATGCTTCTTTAGTAGCATTGCATACAAGTACCACTTCTTCATCTTATTAA | 3885 | 0.4018 | MLEKTSLDEDITSTEMTGSASHHPPVPEGSENVQDMAEMNQQNSKKNKVKDQSNKTVPFYKLFSFADSWDYMLMFVGTLSAVGNGISMPLMTIIIGDALDAFGGNVNTKQIVHQVSKVSLKFAIMGACTFFAVFLREIQSARIRALYLKAILRQDISFFDTETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVSCFLGGLVVAFIKGWLLTLILLSSLPLLVLSGSLMSFAYAMMASRGQAAYSEAAIIVERIIGSIRTVASFTGEKQAIAQYNISLSKSYRIGVQEGLAIGLGLGTVRLFVYCTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSMSLGQASPCLTAFAAGQAAAFKMFETIKRKPAIDAYDTTGRKLDDIRGDIELREVCFSYPARPNEMIFNAFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFAGSIKENIGYGKDAATDEEIRAAAEFANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQETLDRIMINRTTIIIAHRLSTIRNVDSVAVIHQGKVVEKGTHAELTKDPDGAYSQLIRLQEIKKDSSEQYDANDSDKLENFVDSGRESSQRSLSRGSSGIGKRSDNSFRVSNSIPTTLVKGAEVVPSNSASSHISKTQDVPDVPFLRLAYLNKPEIPVLLIGTLAAAVIGAILPIVGFLTSKMINTFFEPADELRQDSKFWSLIFVSLSVACFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDISTVITALVISFEANWQLSLIIIVLLPLLFVNGHFQIKSMQGFNTDAKKLFEEASQVAKDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISNFFLFCVYACSFYAGAQLVEKGKTSISEVFQVFFSLTMAAVAIAQSGFTAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIFKKLSLTIRSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATETEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSTTSSSY | 1294 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre16g04871 | 1294 | ProSitePatterns | ABC transporters family signature. | 1188 | 1202 | IPR017871 | GO:0005524|GO:0016887 | |
Trre16g04871 | 1294 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 727 | 1013 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g04871 | 1294 | FunFam | ABC transporter B family member 1 | 1038 | 1287 | - | - | |
Trre16g04871 | 1294 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1048 | 1285 | IPR003439 | GO:0005524 | |
Trre16g04871 | 1294 | MobiDBLite | consensus disorder prediction | 632 | 651 | - | - | |
Trre16g04871 | 1294 | FunFam | ABC transporter B family member 1 | 379 | 628 | - | - | |
Trre16g04871 | 1294 | SUPERFAMILY | ABC transporter transmembrane region | 714 | 1028 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g04871 | 1294 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 381 | 627 | IPR027417 | - | |
Trre16g04871 | 1294 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 74 | 350 | - | - | |
Trre16g04871 | 1294 | MobiDBLite | consensus disorder prediction | 652 | 675 | - | - | |
Trre16g04871 | 1294 | FunFam | ABC transporter B family member 1 | 706 | 1011 | - | - | |
Trre16g04871 | 1294 | Gene3D | ABC transporter type 1, transmembrane domain | 140 | 1004 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g04871 | 1294 | Pfam | ABC transporter | 1067 | 1216 | IPR003439 | GO:0005524 | |
Trre16g04871 | 1294 | Gene3D | ABC transporter type 1, transmembrane domain | 37 | 137 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g04871 | 1294 | CDD | ABC_MTABC3_MDL1_MDL2 | 1048 | 1283 | - | - | |
Trre16g04871 | 1294 | ProSitePatterns | ABC transporters family signature. | 528 | 542 | IPR017871 | GO:0005524|GO:0016887 | |
Trre16g04871 | 1294 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 389 | 625 | IPR003439 | GO:0005524 | |
Trre16g04871 | 1294 | Gene3D | ABC transporter type 1, transmembrane domain | 1012 | 1292 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g04871 | 1294 | SMART | AAA_5 | 1075 | 1269 | IPR003593 | GO:0016887 | |
Trre16g04871 | 1294 | SMART | AAA_5 | 416 | 588 | IPR003593 | GO:0016887 | |
Trre16g04871 | 1294 | CDD | ABC_MTABC3_MDL1_MDL2 | 389 | 627 | - | - | |
Trre16g04871 | 1294 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 75 | 354 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g04871 | 1294 | Pfam | ABC transporter | 408 | 556 | IPR003439 | GO:0005524 | |
Trre16g04871 | 1294 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 716 | 1031 | - | - | |
Trre16g04871 | 1294 | Gene3D | - | 1038 | 1287 | IPR027417 | - | |
Trre16g04871 | 1294 | Pfam | ABC transporter transmembrane region | 726 | 998 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g04871 | 1294 | Pfam | ABC transporter transmembrane region | 74 | 340 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Trre16g04871 | 1294 | PANTHER | ABC TRANSPORTER B FAMILY | 37 | 630 | IPR039421 | - | |
Trre16g04871 | 1294 | SUPERFAMILY | ABC transporter transmembrane region | 61 | 373 | IPR036640 | GO:0005524|GO:0016020 | |
Trre16g04871 | 1294 | Gene3D | - | 387 | 654 | IPR027417 | - | |
Trre16g04871 | 1294 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Trre16g04871 | 1294 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1037 | 1285 | IPR027417 | - | |
Trre16g04871 | 1294 | FunFam | Uncharacterized protein | 1012 | 1038 | - | - | |
Trre16g04871 | 1294 | MobiDBLite | consensus disorder prediction | 632 | 675 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre16g04871 | Trre-Chr16 | 52642437 | 52648075 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre16g04871 | 55 | 1289 | Calmodulin-binding Proteins | AT2G36910 | 42.732 | 0.0 | 980 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre16g04871 | K05658 | - | gmx:100777713 | 1925.6 |