Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04871 ATGTTGGAAAAGACTAGTTTGGATGAAGATATTACTTCAACTGAGATGACAGGGTCGGCAAGTCATCATCCACCAGTTCCAGAAGGTTCTGAAAATGTTCAAGACATGGCTGAAATGAACCAGCAGAATTCAAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATATGCTTATGTTTGTTGGTACTTTAAGTGCTGTTGGGAATGGAATCTCTATGCCTTTAATGACTATAATTATCGGAGATGCTCTTGATGCTTTTGGAGGAAATGTTAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCCCTCAAGTTTGCAATCATGGGTGCATGCACTTTTTTTGCAGTGTTTCTACGAGAGATACAGTCTGCAAGAATACGAGCATTATACCTAAAAGCGATTTTACGGCAAGATATCAGTTTTTTTGATACAGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTATGTGTCATGTTTTTTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTTTAACCCTTATCCTTCTATCGTCTCTCCCTCTTCTTGTCCTCTCTGGTTCATTAATGAGCTTTGCATATGCAATGATGGCTTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAATCGGTTCAATTCGAACAGTTGCATCATTTACCGGCGAAAAGCAAGCTATAGCTCAATACAATATATCCTTATCTAAATCTTATAGAATTGGCGTGCAAGAAGGACTAGCTATTGGTTTAGGCCTCGGTACAGTTCGTTTATTTGTTTATTGCACTTATGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACTGGAGGTGAAGTCATAAGTGTATTTTTTGCAATACTAACAGGTTCCATGTCTCTAGGACAGGCATCTCCATGTTTAACCGCATTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGCAATCGATGCTTATGATACGACTGGACGAAAGCTTGATGACATTCGCGGAGACATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATCTCAATATCAAGTGGCACTACCGCGGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCGACGGTTATAAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATTGATAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCAGTTCTCTTTGCTGGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGCTGCAACCGATGAAGAAATCAGAGCTGCAGCCGAATTTGCTAATGCTGCTAACTTCATTGATAAATTCCCGCATGGACTTGAAACAATGGTCGGCGAGCACGGTGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTTGATGAAGCAACAAGCGCACTTGATGCAGAATCTGAAAGATTAGTACAAGAGACACTAGACAGAATTATGATAAACCGAACAACTATCATCATCGCCCACCGTCTTAGCACAATAAGGAATGTTGACAGCGTTGCAGTTATTCACCAAGGGAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAAAAAGGATTCATCCGAACAGTATGATGCTAATGACTCAGATAAGCTAGAAAACTTTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTTTAAGCCGTGGATCATCAGGGATAGGAAAAAGAAGTGACAACTCATTCCGAGTATCAAATTCTATTCCTACCACACTAGTAAAAGGAGCTGAAGTTGTTCCTTCAAATTCAGCATCATCACATATAAGTAAAACTCAAGATGTCCCAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTATTACTCATAGGGACTCTAGCTGCAGCAGTTATCGGAGCAATACTACCTATTGTGGGATTTCTAACCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTCAAGACTCAAAGTTTTGGTCACTAATATTTGTTTCCCTTAGTGTGGCTTGCTTCGCTTTTCATCCATTAAGGTCCTACTTTTTTGCGGTTGCTGGTTCGAAATTGATAAAAAGGATCCGCTTGATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTGCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAACTTTGGTTGGCGATGCACTTGGTTTGCTTGTTCAAGATATTTCTACAGTTATTACAGCCTTGGTAATTTCCTTTGAGGCGAATTGGCAGCTTTCTCTCATCATTATTGTTTTGTTACCTCTACTATTTGTAAATGGACATTTTCAAATTAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAAGGATGCAGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAAGAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTTAGTGGAATTGGTTTTGGCATATCAAACTTCTTTTTGTTTTGTGTCTATGCATGCAGTTTTTATGCTGGCGCCCAACTTGTTGAGAAGGGAAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACTATGGCAGCTGTCGCAATAGCTCAATCCGGCTTCACGGCACCAGGAGCTAGTAAAGCAAAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGAGAGATAGAGTTTCACAATGTCGCTTTCAAGTATCCAACTAGACCCGATGTTCATATATTCAAAAAGCTTTCCTTAACCATTCGTTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGACTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAACAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCCGGAGGACAGAAGCAACGCGTAGCAATTGCGAGAGCCATAGTGAACAGTCCAAGAATATTACTATTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGACAGAACAACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAACAAGGGTGGTACCTATGCTTCTTTAGTAGCATTGCATACAAGTACCACTTCTTCATCTTATTAA 3885 0.4018 MLEKTSLDEDITSTEMTGSASHHPPVPEGSENVQDMAEMNQQNSKKNKVKDQSNKTVPFYKLFSFADSWDYMLMFVGTLSAVGNGISMPLMTIIIGDALDAFGGNVNTKQIVHQVSKVSLKFAIMGACTFFAVFLREIQSARIRALYLKAILRQDISFFDTETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVSCFLGGLVVAFIKGWLLTLILLSSLPLLVLSGSLMSFAYAMMASRGQAAYSEAAIIVERIIGSIRTVASFTGEKQAIAQYNISLSKSYRIGVQEGLAIGLGLGTVRLFVYCTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSMSLGQASPCLTAFAAGQAAAFKMFETIKRKPAIDAYDTTGRKLDDIRGDIELREVCFSYPARPNEMIFNAFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFAGSIKENIGYGKDAATDEEIRAAAEFANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQETLDRIMINRTTIIIAHRLSTIRNVDSVAVIHQGKVVEKGTHAELTKDPDGAYSQLIRLQEIKKDSSEQYDANDSDKLENFVDSGRESSQRSLSRGSSGIGKRSDNSFRVSNSIPTTLVKGAEVVPSNSASSHISKTQDVPDVPFLRLAYLNKPEIPVLLIGTLAAAVIGAILPIVGFLTSKMINTFFEPADELRQDSKFWSLIFVSLSVACFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDISTVITALVISFEANWQLSLIIIVLLPLLFVNGHFQIKSMQGFNTDAKKLFEEASQVAKDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISNFFLFCVYACSFYAGAQLVEKGKTSISEVFQVFFSLTMAAVAIAQSGFTAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIFKKLSLTIRSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATETEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSTTSSSY 1294
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04871 1294 ProSitePatterns ABC transporters family signature. 1188 1202 IPR017871 GO:0005524|GO:0016887
Trre16g04871 1294 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 727 1013 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04871 1294 FunFam ABC transporter B family member 1 1038 1287 - -
Trre16g04871 1294 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1048 1285 IPR003439 GO:0005524
Trre16g04871 1294 MobiDBLite consensus disorder prediction 632 651 - -
Trre16g04871 1294 FunFam ABC transporter B family member 1 379 628 - -
Trre16g04871 1294 SUPERFAMILY ABC transporter transmembrane region 714 1028 IPR036640 GO:0005524|GO:0016020
Trre16g04871 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 627 IPR027417 -
Trre16g04871 1294 CDD ABC_6TM_Pgp_ABCB1_D1_like 74 350 - -
Trre16g04871 1294 MobiDBLite consensus disorder prediction 652 675 - -
Trre16g04871 1294 FunFam ABC transporter B family member 1 706 1011 - -
Trre16g04871 1294 Gene3D ABC transporter type 1, transmembrane domain 140 1004 IPR036640 GO:0005524|GO:0016020
Trre16g04871 1294 Pfam ABC transporter 1067 1216 IPR003439 GO:0005524
Trre16g04871 1294 Gene3D ABC transporter type 1, transmembrane domain 37 137 IPR036640 GO:0005524|GO:0016020
Trre16g04871 1294 CDD ABC_MTABC3_MDL1_MDL2 1048 1283 - -
Trre16g04871 1294 ProSitePatterns ABC transporters family signature. 528 542 IPR017871 GO:0005524|GO:0016887
Trre16g04871 1294 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 389 625 IPR003439 GO:0005524
Trre16g04871 1294 Gene3D ABC transporter type 1, transmembrane domain 1012 1292 IPR036640 GO:0005524|GO:0016020
Trre16g04871 1294 SMART AAA_5 1075 1269 IPR003593 GO:0016887
Trre16g04871 1294 SMART AAA_5 416 588 IPR003593 GO:0016887
Trre16g04871 1294 CDD ABC_MTABC3_MDL1_MDL2 389 627 - -
Trre16g04871 1294 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 75 354 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04871 1294 Pfam ABC transporter 408 556 IPR003439 GO:0005524
Trre16g04871 1294 CDD ABC_6TM_Pgp_ABCB1_D2_like 716 1031 - -
Trre16g04871 1294 Gene3D - 1038 1287 IPR027417 -
Trre16g04871 1294 Pfam ABC transporter transmembrane region 726 998 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04871 1294 Pfam ABC transporter transmembrane region 74 340 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04871 1294 PANTHER ABC TRANSPORTER B FAMILY 37 630 IPR039421 -
Trre16g04871 1294 SUPERFAMILY ABC transporter transmembrane region 61 373 IPR036640 GO:0005524|GO:0016020
Trre16g04871 1294 Gene3D - 387 654 IPR027417 -
Trre16g04871 1294 MobiDBLite consensus disorder prediction 1 31 - -
Trre16g04871 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1037 1285 IPR027417 -
Trre16g04871 1294 FunFam Uncharacterized protein 1012 1038 - -
Trre16g04871 1294 MobiDBLite consensus disorder prediction 632 675 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre16g04871 Trre-Chr16 52642437 52648075 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04871 55 1289 Calmodulin-binding Proteins AT2G36910 42.732 0.0 980
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04871 K05658 - gmx:100777713 1925.6