Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04870 ATGTTGGAAAAGACTAGTTTGGATGAAGATATTACTTCAACTGAGATGACAGGGTCGGCAAGTCATCATCCACCAGTTCCAGAAGGTTCTGAAAATGTTCAAGACATGGCTGAAATGAACCAGCAGAATTCAAAGAAGAACAAGGTGAAGGATCAAAGCAATAAAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGACTCTTGGGATTATATGCTTATGTTTGTTGGTACTTTAAGTGCTGTTGGGAATGGAATCTCTATGCCTTTAATGACTATAATTATCGGAGATGCTCTTGATGCTTTTGGAGGAAATGTTAACACTAAACAAATAGTTCATCAAGTTTCCAAGGTGTCCCTCAAGTTTGCAATCATGGGTGCATGCACTTTTTTTGCAGTGTTTCTACAGGTGTCTTGCTGGATGATCACAGGAGAGATACAGTCTGCAAGAATACGAGCATTATACCTAAAAGCGATTTTACGGCAAGATATCAGTTTTTTTGATACAGAAACAAACAGTGGTGAAGTTGTTGGAAGAATGTCAGGTGATACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATACAGTATGTGTCATGTTTTTTAGGAGGTTTAGTTGTGGCATTCATCAAGGGTTGGCTTTTAACCCTTATCCTTCTATCGTCTCTCCCTCTTCTTGTCCTCTCTGGTTCATTAATGAGCTTTGCATATGCAATGATGGCTTCCCGTGGACAAGCAGCTTATTCTGAAGCAGCAATTATAGTAGAGCGGATAATCGGTTCAATTCGAACAGTTGCATCATTTACCGGCGAAAAGCAAGCTATAGCTCAATACAATATATCCTTATCTAAATCTTATAGAATTGGCGTGCAAGAAGGACTAGCTATTGGTTTAGGCCTCGGTACAGTTCGTTTATTTGTTTATTGCACTTATGCTTTGACCGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGTTATACTGGAGGTGAAGTCATAAGTGTATTTTTTGCAATACTAACAGGTTCCATGTCTCTAGGACAGGCATCTCCATGTTTAACCGCATTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGCAATCGATGCTTATGATACGACTGGACGAAAGCTTGATGACATTCGCGGAGACATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTGCAAGACCAAATGAAATGATATTCAATGCATTTTCTATCTCAATATCAAGTGGCACTACCGCGGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCGACGGTTATAAGTTTGATAGAGAGATTTTATGATCCACAAGGTGGTGAAATTCTCATTGATAGTATCAACCTTAGAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTCAGTCAAGAACCAGTTCTCTTTGCTGGTAGCATTAAAGAGAACATTGGCTATGGTAAGGATGCTGCAACCGATGAAGAAATCAGAGCTGCAGCCGAATTTGCTAATGCTGCTAACTTCATTGATAAATTCCCGCATGGACTTGAAACAATGGTCGGCGAGCACGGTGCTCAGCTTTCTGGAGGCCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAAGAATTCTACTCCTTGATGAAGCAACAAGCGCACTTGATGCAGAATCTGAAAGATTAGTACAAGAGACACTAGACAGAATTATGATAAACCGAACAACTATCATCATCGCCCACCGTCTTAGCACAATAAGGAATGTTGACAGCGTTGCAGTTATTCACCAAGGGAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTATAGTCAACTCATTAGGCTGCAAGAAATTAAAAAGGATTCATCCGAACAGTATGATGCTAATGACTCAGATAAGCTAGAAAACTTTGTAGATTCTGGAAGAGAGTCAAGCCAAAGGTCTTTAAGCCGTGGATCATCAGGGATAGGAAAAAGAAGTGACAACTCATTCCGAGTATCAAATTCTATTCCTACCACACTAGTAAAAGGAGCTGAAGTTGTTCCTTCAAATTCAGCATCATCACATATAAGTAAAACTCAAGATGTCCCAGATGTCCCATTTCTCCGCCTCGCTTATCTTAACAAGCCTGAAATCCCAGTATTACTCATAGGGACTCTAGCTGCAGCAGTTATCGGAGCAATACTACCTATTGTGGGATTTCTAACCTCCAAGATGATAAATACATTCTTTGAGCCTGCAGATGAACTTCGTCAAGACTCAAAGTTTTGGTCACTAATATTTGTTTCCCTTAGTGTGGCTTGCTTCGCTTTTCATCCATTAAGGTCCTACTTTTTTGCGGTTGCTGGTTCGAAATTGATAAAAAGGATCCGCTTGATGTGCTTTGAGAAAATAATTCACATGGAAGTAGGCTGGTTTGATAAAGCTGAGAATTCAAGTGGTGCACTTGGAGCAAGGCTGTCAACTGATGCTGCTTCAATTCGAACTTTGGTTGGCGATGCACTTGGTTTGCTTGTTCAAGATATTTCTACAGTTATTACAGCCTTGGTAATTTCCTTTGAGGCGAATTGGCAGCTTTCTCTCATCATTATTGTTTTGTTACCTCTACTATTTGTAAATGGACATTTTCAAATTAAGTCCATGCAAGGATTCAACACAGATGCAAAGAAACTATTTGAGGAAGCAAGTCAAGTAGCGAAGGATGCAGTAGGGAATATCAGAACAGTTTCTGCTTTCTGTGCCGAAGAGAAGGTGATGGAGTTATATCAGAAGAAATGTGTAGTACCAGTCCAGACAGGAAAAAGGCAGGGTTTAGTTAGTGGAATTGGTTTTGGCATATCAAACTTCTTTTTGTTTTGTGTCTATGCATGCAGTTTTTATGCTGGCGCCCAACTTGTTGAGAAGGGAAAAACATCAATATCAGAAGTTTTTCAAGTATTTTTCTCTCTCACTATGGCAGCTGTCGCAATAGCTCAATCCGGCTTCACGGCACCAGGAGCTAGTAAAGCAAAAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAACAATAGACACCAGTGATGAATCAGGAATGACACTAGAAGATGTGAAAGGAGAGATAGAGTTTCACAATGTCGCTTTCAAGTATCCAACTAGACCCGATGTTCATATATTCAAAAAGCTTTCCTTAACCATTCGTTCAGGACAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGTTGCAAAGATTTTATGATCCAGATTCAGGTCAGATTAAACTGGATGGAACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTCAATGACACCATCAGAGCCAACATTGCTTATGGAAAAGGTGGTAATGCAACTGAGACTGAAATTATAGCTGCGGCAGAACTGGCAAATGCTCATAAGTTCATTAGCAGTTTGCAACAGGGGTATGATACAATAGTAGGGGAGAGAGGGACTCAACTATCCGGAGGACAGAAGCAACGCGTAGCAATTGCGAGAGCCATAGTGAACAGTCCAAGAATATTACTATTAGATGAAGCCACAAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAAGATGCACTTGATAGAGTGAGGGTGGACAGAACAACCATTGTGGTGGCTCATAGATTATCTACCATAAAGGGTGCAAATTCAATAGCAGTTGTTAAAAATGGAGTCATTGAAGAAAAAGGAAAGCATGACACATTGCTCAACAAGGGTGGTACCTATGCTTCTTTAGTAGCATTGCATACAAGTACCACTTCTTCATCTTATTAA 3909 0.4024 MLEKTSLDEDITSTEMTGSASHHPPVPEGSENVQDMAEMNQQNSKKNKVKDQSNKTVPFYKLFSFADSWDYMLMFVGTLSAVGNGISMPLMTIIIGDALDAFGGNVNTKQIVHQVSKVSLKFAIMGACTFFAVFLQVSCWMITGEIQSARIRALYLKAILRQDISFFDTETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQYVSCFLGGLVVAFIKGWLLTLILLSSLPLLVLSGSLMSFAYAMMASRGQAAYSEAAIIVERIIGSIRTVASFTGEKQAIAQYNISLSKSYRIGVQEGLAIGLGLGTVRLFVYCTYALTVWFGGKMVLEKGYTGGEVISVFFAILTGSMSLGQASPCLTAFAAGQAAAFKMFETIKRKPAIDAYDTTGRKLDDIRGDIELREVCFSYPARPNEMIFNAFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQGGEILIDSINLREFQLKWIRQKIGLVSQEPVLFAGSIKENIGYGKDAATDEEIRAAAEFANAANFIDKFPHGLETMVGEHGAQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQETLDRIMINRTTIIIAHRLSTIRNVDSVAVIHQGKVVEKGTHAELTKDPDGAYSQLIRLQEIKKDSSEQYDANDSDKLENFVDSGRESSQRSLSRGSSGIGKRSDNSFRVSNSIPTTLVKGAEVVPSNSASSHISKTQDVPDVPFLRLAYLNKPEIPVLLIGTLAAAVIGAILPIVGFLTSKMINTFFEPADELRQDSKFWSLIFVSLSVACFAFHPLRSYFFAVAGSKLIKRIRLMCFEKIIHMEVGWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDISTVITALVISFEANWQLSLIIIVLLPLLFVNGHFQIKSMQGFNTDAKKLFEEASQVAKDAVGNIRTVSAFCAEEKVMELYQKKCVVPVQTGKRQGLVSGIGFGISNFFLFCVYACSFYAGAQLVEKGKTSISEVFQVFFSLTMAAVAIAQSGFTAPGASKAKSSAASIFAILDQKSTIDTSDESGMTLEDVKGEIEFHNVAFKYPTRPDVHIFKKLSLTIRSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNATETEIIAAAELANAHKFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIVNSPRILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGANSIAVVKNGVIEEKGKHDTLLNKGGTYASLVALHTSTTSSSY 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04870 1302 FunFam ABC transporter B family member 1 714 1019 - -
Trre16g04870 1302 Pfam ABC transporter transmembrane region 734 1006 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04870 1302 Pfam ABC transporter transmembrane region 74 348 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04870 1302 MobiDBLite consensus disorder prediction 640 659 - -
Trre16g04870 1302 Pfam ABC transporter 416 564 IPR003439 GO:0005524
Trre16g04870 1302 ProSitePatterns ABC transporters family signature. 536 550 IPR017871 GO:0005524|GO:0016887
Trre16g04870 1302 FunFam ABC transporter B family member 1 387 636 - -
Trre16g04870 1302 Gene3D ABC transporter type 1, transmembrane domain 714 1022 IPR036640 GO:0005524|GO:0016020
Trre16g04870 1302 CDD ABC_6TM_Pgp_ABCB1_D1_like 74 358 - -
Trre16g04870 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 389 635 IPR027417 -
Trre16g04870 1302 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 397 633 IPR003439 GO:0005524
Trre16g04870 1302 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 75 362 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04870 1302 FunFam ABC transporter B family member 1 1046 1295 - -
Trre16g04870 1302 MobiDBLite consensus disorder prediction 660 683 - -
Trre16g04870 1302 Gene3D - 387 636 IPR027417 -
Trre16g04870 1302 Gene3D - 704 713 IPR027417 -
Trre16g04870 1302 Gene3D - 1046 1295 IPR027417 -
Trre16g04870 1302 FunFam ABC transporter B family member 9 61 393 - -
Trre16g04870 1302 CDD ABC_MTABC3_MDL1_MDL2 1056 1291 - -
Trre16g04870 1302 CDD ABC_MTABC3_MDL1_MDL2 397 635 - -
Trre16g04870 1302 SUPERFAMILY ABC transporter transmembrane region 722 1036 IPR036640 GO:0005524|GO:0016020
Trre16g04870 1302 CDD ABC_6TM_Pgp_ABCB1_D2_like 724 1039 - -
Trre16g04870 1302 FunFam Uncharacterized protein 1020 1046 - -
Trre16g04870 1302 ProSitePatterns ABC transporters family signature. 1196 1210 IPR017871 GO:0005524|GO:0016887
Trre16g04870 1302 PANTHER ABC TRANSPORTER B FAMILY 37 638 IPR039421 -
Trre16g04870 1302 Gene3D ABC transporter type 1, transmembrane domain 1023 1300 IPR036640 GO:0005524|GO:0016020
Trre16g04870 1302 MobiDBLite consensus disorder prediction 1 31 - -
Trre16g04870 1302 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 735 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04870 1302 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1056 1293 IPR003439 GO:0005524
Trre16g04870 1302 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1045 1293 IPR027417 -
Trre16g04870 1302 SUPERFAMILY ABC transporter transmembrane region 61 381 IPR036640 GO:0005524|GO:0016020
Trre16g04870 1302 Gene3D ABC transporter type 1, transmembrane domain 61 648 IPR036640 GO:0005524|GO:0016020
Trre16g04870 1302 MobiDBLite consensus disorder prediction 640 683 - -
Trre16g04870 1302 Pfam ABC transporter 1075 1224 IPR003439 GO:0005524
Trre16g04870 1302 SMART AAA_5 424 596 IPR003593 GO:0016887
Trre16g04870 1302 SMART AAA_5 1083 1277 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04870 Trre-Chr16 52642437 52648075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04870 55 1297 Calmodulin-binding Proteins AT2G36910 43.131 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04870 K05658 - gmx:100777713 1950.25