Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04869 ATGGATATAGATGCTGCAAGTATTCAGCCAGTAGTAGATTCTGGAAGCAAGCAAGATTCAGAGAAGAACAAAGCTAAAGATGAAAAAACCAATACAGTACCTTTATACAAGCTTTTTTCATTTGCTGATTCTTTGGATCATTTATTGATGATTGTTGGGACTATTGGTGCTATTGGGAATGGAATCTCCATGCCTTTGATGACTTTGATATTTGGAAATATGATTAATGCATTTGGTGGATCATCAAGCACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCCTTGAAATTCGTATACTTGGCTGCGGGTACCTTTGTTGCGTCTCTTTTGCAATTGACATGCTGGATGATCACTGGTGAGAGACAGGCTGCAAGAATTAGAGGTTTATACCTACAAACAATTTTGAGGCAAGACGTGAGTTTCTTTGATAAGGAAACTAATACTGGTGAGGTTGTTGGAAGAATGTCGGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGGCAGTTTCTACAGTTAATTGCTACATTCTTTGGAGGTTTTGTTGTCGCATTCATCAAGGGATGGCTTTTAACCGTTGTGATGATGTCGTGTATTCCACTTCTTGTCTTGTCTGGTGCCGTGATGAGCATGGTTATTACAAAAGCATCTTCCAGTGGACAAACAGCTTATTCTAAAGCAGCAACTGTAGTAGAGCAGACAATCGGTTCTATCAGAACTGTTGCGTCGTTCACCGGAGAGAAACAAGCCATAGCTAAATATGACCAGTCCTTAATTGATGCTTACAAAACTGTAGTGAAAGAGGCCCTAGCTTCTGGTTTGGGGTTTGGTTCACTCTTCTTTGTTCTTATTTCTAGTTATGGTTTGGCAGTATGGTTTGGTGGAAAGATGGTAATCGAGAAAGGTTATACAGGAGGGGAAGTTGTCACTATAATTTTTGCTGTATTGACTGGATCCATGTCTCTGGGACAAGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCGGCATTTAAGATGTTTGAAACGATTAAAAGGAAGCCAGAAATTGATGCTTATGACACAACCGGTAAAAAGCTTGATGATATTCGTGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTATCCTACAAGGCCAGATGAACCGATATTCAATGGATTTTCTCTTGCAATACCAAGTGGGACTACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTCAGTTTGATAGAGAGATTTTACGATCCACAAGCTGGTGAAGTTCTAATCGATGGTATCAACCTCAAAGAATTTCAACTTAAATGGATCCGACAGAAAATTGGCCTAGTGAGTCAGGAACCGGTTCTCTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGGTGCAACTGATGAAGAAATCAGAGCTGCAGCAGAACTTGCTAATGCCGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACCATGGTTGGTGAGCATGGAACTCAGCTCTCCGGAGGTCAAAAGCAAAGAGTTGCAATTGCAAGAGCAATTCTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGCGCGCTTGGTGCGGAATCTGAAAGAGTAGTACAAGAGGCATTGGACAGAATAATGGTAAACCGAACAACTGTCATTGTAGCTCATCGCTTAAGTACCATAAAGAATGCTGATACCATTGCGGTTATTCATCAAGGAAAAATAATTGAAAGAGGTTCACATGCTCATCTCACAAGGGACCCCGATGGATCCTATAGCCAGCTCATTAGGCTGCAAGAAATGAAGGGGTCAGAACAGAATGTTGCAAATGACACAAACAAGTCAAACAGTCTAGTGTTATCTGAAAAACGATCGAGTCATAGATCTTTATCCTCGAGGTCTATAAGTCGAGTGTCATCTGGAGGTGGTGACAGTGGTCGTCACTCATTCACAGCGTCCTTTGGTGTGCCAACCACAATAGTTGGCTTCTCAGAAACCGCGGATGGTGGAACTCAAGCTCCTCCTTCAAAAGTTTCTTCACCACCAGATGTGCCGCTTTATCGCCTGGCCTATTTAAACAAGCCAGAAATTCCTGTCTTAATTATAGGGACAATAGCTGCAGTGCTGCACGGTGTAATATTACCGGTTTTCGGCCTCTTGATATCGAAAATGATAAGTATTTTCTACGAGCCACATGACGAACTTCGTCACGATTCAAAGGTTTGGGCGTTAATATTTGTTGGGCTTGGTGTTGCCTCGTTATTCATTTTTCCATGTAGATTCTACTTTTTCGGCATTGCTGGAGGTAAGTTGATCAAAAGGATAAGGAAAATGTGTTTTGAGAAGGTAGTTCACATGGAAGTAAGTTGGTTTGACGAAGCTGAGCATTCAAGTGGAGCAATTGGAGCAAGGCTCTCAACCGATGCAGCTTCAATTCGAGCTTTGGTTGGTGATGCACTCGGTTTACTGGTTGAAAATATTGCTACAGCTATAGCTGGCTTGGTAATTGCTTTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCTTTGGTGCCTCTACTAGGACTTAATGGATTTTTGCAAGTGAAGTTCTTGAAAGGGTTCAGCAATGATTCAAAGAAATTGTACGAGGAGGCAAGTCAAGTGGCGAACGATGCAGTGGGGAGTATAAGAACCATTGCTTCTTTCTGTTCTGAAGAGAAGGTGATGAACCTATATAAGAAAAAATGTGAGGGACCAATTAAGACAGGCATAAGGCGAGGAATAGTAAGCGGATTTGGTTTTGGGATATCATTCTTCGTGCTGTATGCAGTTTATGCAACCAGTTTTTATGCTGGAGCACGTCTCGTCGAGGATGGAAAAGCTTCATTCTCAGACGTTTTTCGTGTATTTTTTGCCCTAAGCATGGCAGCTATAGGACTCTCTCAATCCGGGTCGTTGCTACCTGATTCGACTAAGGCAAAAAGTGCAGCTGCTTCCATATTTGCTATTCTTGATAGGAAATCACTCATAGATCCAAATGATGAATCAGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGTTAAAGCATGTCAGTTTCAAGTATCCTACTAGACCCGATGTTCAAATATTCAGAGATCTTAGCTTGACTATTCACTGTGGCAAGACAGTTGCACTCGTTGGAGAAAGTGGAAGCGGAAAATCAACAGTGATATCGTTAATACAAAGATTTTATGATCCAGATTCAGGTCACATTACACTTGATGGAAAAGAAATCCAAAGTCTACAAGTGAAATGGCTAAGACAACAAATGGCTCTAGTAAGCCAAGAGCCTGTTCTTTTCAATGATACCATCAGAGCCAATATTGCATACGGAAAAGGAGGAGATGCATCGGAAGCAGAGATTATAGCTGCAGCAGAATTAGCAAATGCGCACAAGTTTATAAGTAGTTTGCAAAAGGGTTATGATACAATAGTAGGAGAGAGAGGAGTTCAATTATCCGGGGGACAGAAACAGCGTGTGGCAATTGCGAGAGCTATAGTGAAGAATCCAAAAATACTATTACTAGATGAAGCAACTAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAAGATGCACTTGATCGTGTTATGGTGGAGCGGACGACAATAATAGTAGCTCATAGGTTATCAACAATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTTATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCATAAGGGTGGTGACTATGCTTCTTTAGTAGCATTGCACACAAGTGCTTCTACATCTTAG 3837 0.4154 MDIDAASIQPVVDSGSKQDSEKNKAKDEKTNTVPLYKLFSFADSLDHLLMIVGTIGAIGNGISMPLMTLIFGNMINAFGGSSSTKEVVDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFLQLIATFFGGFVVAFIKGWLLTVVMMSCIPLLVLSGAVMSMVITKASSSGQTAYSKAATVVEQTIGSIRTVASFTGEKQAIAKYDQSLIDAYKTVVKEALASGLGFGSLFFVLISSYGLAVWFGGKMVIEKGYTGGEVVTIIFAVLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGKKLDDIRGDIELREVCFSYPTRPDEPIFNGFSLAIPSGTTVALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALGAESERVVQEALDRIMVNRTTVIVAHRLSTIKNADTIAVIHQGKIIERGSHAHLTRDPDGSYSQLIRLQEMKGSEQNVANDTNKSNSLVLSEKRSSHRSLSSRSISRVSSGGGDSGRHSFTASFGVPTTIVGFSETADGGTQAPPSKVSSPPDVPLYRLAYLNKPEIPVLIIGTIAAVLHGVILPVFGLLISKMISIFYEPHDELRHDSKVWALIFVGLGVASLFIFPCRFYFFGIAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGAIGARLSTDAASIRALVGDALGLLVENIATAIAGLVIAFVASWQLALVILALVPLLGLNGFLQVKFLKGFSNDSKKLYEEASQVANDAVGSIRTIASFCSEEKVMNLYKKKCEGPIKTGIRRGIVSGFGFGISFFVLYAVYATSFYAGARLVEDGKASFSDVFRVFFALSMAAIGLSQSGSLLPDSTKAKSAAASIFAILDRKSLIDPNDESGMTLEEVKGEIELKHVSFKYPTRPDVQIFRDLSLTIHCGKTVALVGESGSGKSTVISLIQRFYDPDSGHITLDGKEIQSLQVKWLRQQMALVSQEPVLFNDTIRANIAYGKGGDASEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKGGDYASLVALHTSASTS 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04869 1278 FunFam ABC transporter B family member 9 1001 1023 - -
Trre16g04869 1278 CDD ABC_6TM_Pgp_ABCB1_D2_like 702 1017 - -
Trre16g04869 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 611 IPR027417 -
Trre16g04869 1278 ProSitePatterns ABC transporters family signature. 1174 1188 IPR017871 GO:0005524|GO:0016887
Trre16g04869 1278 PANTHER ABC TRANSPORTER B FAMILY 14 614 IPR039421 -
Trre16g04869 1278 Pfam ABC transporter 1053 1202 IPR003439 GO:0005524
Trre16g04869 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524
Trre16g04869 1278 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 334 - -
Trre16g04869 1278 CDD ABC_MTABC3_MDL1_MDL2 1034 1269 - -
Trre16g04869 1278 Gene3D - 371 641 IPR027417 -
Trre16g04869 1278 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524|GO:0016887
Trre16g04869 1278 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1034 1271 IPR003439 GO:0005524
Trre16g04869 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 51 338 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04869 1278 FunFam ABC transporter B family member 1 1024 1273 - -
Trre16g04869 1278 MobiDBLite consensus disorder prediction 1 28 - -
Trre16g04869 1278 FunFam ABC transporter B family member 1 692 1000 - -
Trre16g04869 1278 FunFam ABC transporter B family member 9 37 369 - -
Trre16g04869 1278 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 713 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04869 1278 SMART AAA_5 400 572 IPR003593 GO:0016887
Trre16g04869 1278 SMART AAA_5 1061 1254 IPR003593 GO:0016887
Trre16g04869 1278 FunFam ABC transporter B family member 1 363 612 - -
Trre16g04869 1278 MobiDBLite consensus disorder prediction 615 658 - -
Trre16g04869 1278 CDD ABC_MTABC3_MDL1_MDL2 373 611 - -
Trre16g04869 1278 Pfam ABC transporter 392 540 IPR003439 GO:0005524
Trre16g04869 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1023 1271 IPR027417 -
Trre16g04869 1278 SUPERFAMILY ABC transporter transmembrane region 37 357 IPR036640 GO:0005524|GO:0016020
Trre16g04869 1278 Pfam ABC transporter transmembrane region 50 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04869 1278 Pfam ABC transporter transmembrane region 712 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04869 1278 Gene3D ABC transporter type 1, transmembrane domain 96 944 IPR036640 GO:0005524|GO:0016020
Trre16g04869 1278 Gene3D - 1024 1277 IPR027417 -
Trre16g04869 1278 SUPERFAMILY ABC transporter transmembrane region 700 1018 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04869 Trre-Chr16 52632658 52637767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04869 24 1272 Calmodulin-binding Proteins AT2G36910 45.231 0.0 1078
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04869 K05658 - gmx:100800293 2008.8