Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04863 ATGGCAACGGATATCAGTTTGGAAGGAGATATTCCGAGTCTTCAACCAGTTGTAGATATTGACAGAAAGCAAGATTCAGAGAAAAACAAGGCCAAAGATGCAAAAACCGACACAGTACACTTATACAAGCTTTTCACATTTGCCGATCCTTTGGATCGTTTATTGATGTTTCTGGGGACTGTGGGTGCTATTGGGAATGGAATATCTATACCCTTGATGCTTTTAGTATTTGGCAATTTGATCAATGCATTTGGAGATTCCACGGACTCAATCGTTGTTGATGAAGTCTCCAAGGTGTCTCTAAAATTTGTATACTTGGGGGCAGGTGCCTTTGTTGGGTCATTTTTGCAGTTAACATGCTGGATGATCACCGGAGAGAGACAGGCTGCAAGAATTAGAGGCTTATACCTTAAAACTATTTTGAGACAAGATGTTAGCTTCTTTGATAAGGAAACTAACACTGGGGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTAAAGATGCCATGGGGGAGAAGGTGGGACAGTTCATACAGTTTGTAGCAACTTTCATAGGAGGTTTTGTCATAGCATTCACTAAGGGATGGCTTCTTACTGTTGTCATGCTATCTAGTATACCGCTTATTGTCTTGTCTGGTGCTATGACAAGTATGGTTATTGCAAAAGCAACATCAACTGGACAAGAAGCTTATTCTAAATCAGCAAGTGTGGTAGAGCAGACAATAAGTTCCATCCGAACTGTTGCATCATTTACTGGGGAGAAAGAAGCTATAGCTAAATATAATCAGTCCTTAATCAAGGTCTACAAGACTTCAGTGCAGGAGGCACTAGCATCTGGTGTGGGGTTTGCTACACTCTTTTTTGTTTTTACCTCGAGTTATGCTTTGGCCGTATGGTTTGGCGGGAAACTGATAATAGAGAAAGGATATACAGGAGGGGATGTTATCACAATAATTTTTTGTGTATTTACTGGTTCGATGAATCTTGGGCAGACATCTCCAAGCCTAAGTGCTTTTGCCGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACGATTAAAAGGAAGCCGGAAATTGATGCCTATGACACAACTGGGAAAAAGCTTGATGATATTCGCGGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTACCCTACAAGACCAGATGAATTAATATTCAATGGATTTTCTCTTTCATTACCGAGCGGCACTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCTACAGTCGTTAGTTTGATAGAGAGATTCTATGATCCAACGGATGGAGAAGTTCTCATTGATGGCATTAACCTCAAAGAATTTCAACTGAAATGGATTAGACAGAAAATAGGCCTGGTCAGCCAAGAACCCGTTCTCTTTACTTGCAGCATTAAGGAGAATATTGCCTATGGCAGAGATGGTGCAACTGATGATGAAATCAAAGCTGCAGCGGAACTTGCTAATGCCGCCAAATTTATAGATAAACTTCCTCAGGGACTAGATACAATGGTTGGTGAGCATGGAACACAGCTCTCTGGAGGTCAAAAGCAAAGAGTGGCAATCGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGGACAACTATCGTTGTAGCTCACCGCTTAAGTACAATAAGAAATGTTGATACCATTGCTGTCATTCAACAAGGAAAAATAGTTGAAAGAGGTTCGCATGATGTGCTCACCAAGGATCCCAATGGAGCCTATAGTCAGCTTATTAGACTGCAAGAAACAAAGGGGTCAGAACAAAATGACGTAAACGACACAAACAAGTCAAACAGTATAGTGCATTCTGGAAGACAATCAAGTCAAAGATCTTTTTCCTCGAGATCTATAAGCCAAGGGTCATCTGGAAACAGTGGTCATCACTCATTCTCAGCATCGCATGTTGCACCCACAACTGATGGCTTCTTAGAAACTGCAGATGGTGAATCTCAAGCTTCTCTTTCAATAGTTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCATATTTTAACAAGCCTGAGATTCTAGTCTTATTGTTGGGGACTATAGCTGCAGTGCTGCAAGGAATATTAATGCCCATTTTCGGGGTCTTGCTTTCTAAAATGATAAGTATTTTCTACAAGCCAGCTCATGAACTTCGTCATGATTCAAAAGTTTGGGCAGTAGTGTTTGAAGCGGTTGCTGTGGCAACATTACTCGTTATTCCATGTAGATTCTACTTTTTTGGTATTGCTGGAGGTAAGTTGATCCAAAGGATCCGGAACGTGTGTTTTGAGAAAATAGTTCACATGAATGTAAGTTGGTTTGACGAGGCTGAGCATTCAAGCGGAGCACTTGGAGCAAGGCTCTCCACCGATGCAGCTTCAGTTAGAGCGCTGGTTGGGGATGCACTTGGTTTGCTAGTTCAAAATATTGCTACAGTAATAGCTGGCTTGGTAATTGCTTTTCAAGCATGCTGGCAGCTTGCTTTTATAGTCCTTGCTTTGGCGCCTCTATTAGGACTAAATGGATATGTGCAAGTAAAAGTCTTGAAAGGATTTAGCGCAGATGCAAAGAAATTGTACGAGGAAGCAAGTCAAGTGGCGAATGATGCTGTAGGGAGTATAAGAACGGTTTCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATATCAAGGAAAATGTGAGGGACCAATTAAGAAAGGCATAAGGCGAGGGATAATAAGTGGATTTGGTTTTGGGTTATCATTCTTCGTGCTGTATTCAGTTTATGCCTGCTGTTTTTATGCTGGAGCTCGACTTGTAGAGGATGGCAAATCTACATTCTCAGATGTTTTTCTTGTCTTTTTTGCTCTCAACATGGCAGCTATGGGAGTCTCTCAATCTGGGTCCTTGCTCCCTGATTCAAGTAATGCAAACGGTGCTACTGCGTCCATATTTGCTATTCTTGATCAGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATGACACTGGAACAAGTCAAGGGAGAAATTGAGTTTAACCATGTTAGTTTTAAGTATCCTATTAGACCCGATGTTCAAATATTTAGAGATCTTTGCTTGAACATTCACAGCGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTGCTACAAAGATTCTATGACCCTAACTCAGGACACATTACACTTGATGGAATAGAAATTCAAAGGATGCAAGTGAAATGGATGAGACAACAGATGGGACTGGTAAGCCAAGAGCCAGTTCTTTTCAATGATACGGTTCGAGCCAATATTGCATACGGAAAAGGAGGAGATGCAACAGAGGCAGAAATTATAGCTGCGGCAGAACTTGCAAATGCTCACCAGTTCATAAGTAGTTTGCAGACGGGTTATGACACGATAGTAGGCGAGAGAGGAATTCAATTATCTGGGGGACAGAAGCAGCGGGTGGCAATTGCACGAGCAATGGTGAAGAATCCAAAAATACTGCTACTAGATGAAGCAACAAGCGCACTTGATGCTGAGTCTGAAAAGGTGGTACAAGATGCACTTGACCGTGTTATGGTGGAGCGAACAACAATAATAGTGGCTCATAGGTTATCAACTATTAAGGGTGCAGATTTAATTGCGGTAGTTAAGAATGGTGTTATAGCAGAGAAAGGAAAACATGAAGCATTGCTCCATAAAGGTGGTGATTATGCTTCTTTAGTGGCATTGCATACACACGCAGGCGCTTCTTCATCTTAG 3849 0.4165 MATDISLEGDIPSLQPVVDIDRKQDSEKNKAKDAKTDTVHLYKLFTFADPLDRLLMFLGTVGAIGNGISIPLMLLVFGNLINAFGDSTDSIVVDEVSKVSLKFVYLGAGAFVGSFLQLTCWMITGERQAARIRGLYLKTILRQDVSFFDKETNTGEVVGRMSGDTVLIKDAMGEKVGQFIQFVATFIGGFVIAFTKGWLLTVVMLSSIPLIVLSGAMTSMVIAKATSTGQEAYSKSASVVEQTISSIRTVASFTGEKEAIAKYNQSLIKVYKTSVQEALASGVGFATLFFVFTSSYALAVWFGGKLIIEKGYTGGDVITIIFCVFTGSMNLGQTSPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGKKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSLPSGTTAALVGQSGSGKSTVVSLIERFYDPTDGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGRDGATDDEIKAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTIVVAHRLSTIRNVDTIAVIQQGKIVERGSHDVLTKDPNGAYSQLIRLQETKGSEQNDVNDTNKSNSIVHSGRQSSQRSFSSRSISQGSSGNSGHHSFSASHVAPTTDGFLETADGESQASLSIVSSPPEVPLYRLAYFNKPEILVLLLGTIAAVLQGILMPIFGVLLSKMISIFYKPAHELRHDSKVWAVVFEAVAVATLLVIPCRFYFFGIAGGKLIQRIRNVCFEKIVHMNVSWFDEAEHSSGALGARLSTDAASVRALVGDALGLLVQNIATVIAGLVIAFQACWQLAFIVLALAPLLGLNGYVQVKVLKGFSADAKKLYEEASQVANDAVGSIRTVSSFCAEEKVMELYQGKCEGPIKKGIRRGIISGFGFGLSFFVLYSVYACCFYAGARLVEDGKSTFSDVFLVFFALNMAAMGVSQSGSLLPDSSNANGATASIFAILDQKSQIDPSDESGMTLEQVKGEIEFNHVSFKYPIRPDVQIFRDLCLNIHSGKTVALVGESGSGKSTVISLLQRFYDPNSGHITLDGIEIQRMQVKWMRQQMGLVSQEPVLFNDTVRANIAYGKGGDATEAEIIAAAELANAHQFISSLQTGYDTIVGERGIQLSGGQKQRVAIARAMVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLHKGGDYASLVALHTHAGASSS 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04863 1282 CDD ABC_MTABC3_MDL1_MDL2 1036 1271 - -
Trre16g04863 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 339 - -
Trre16g04863 1282 PANTHER ABC TRANSPORTER B FAMILY 21 618 IPR039421 -
Trre16g04863 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04863 1282 Pfam ABC transporter 1056 1204 IPR003439 GO:0005524
Trre16g04863 1282 SUPERFAMILY ABC transporter transmembrane region 43 362 IPR036640 GO:0005524|GO:0016020
Trre16g04863 1282 Gene3D - 1026 1279 IPR027417 -
Trre16g04863 1282 Gene3D ABC transporter type 1, transmembrane domain 101 997 IPR036640 GO:0005524|GO:0016020
Trre16g04863 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 1019 - -
Trre16g04863 1282 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Trre16g04863 1282 SMART AAA_5 1063 1256 IPR003593 GO:0016887
Trre16g04863 1282 SMART AAA_5 405 591 IPR003593 GO:0016887
Trre16g04863 1282 FunFam ABC transporter B family member 1 1026 1275 - -
Trre16g04863 1282 Pfam ABC transporter transmembrane region 56 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04863 1282 Pfam ABC transporter transmembrane region 714 986 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04863 1282 FunFam ABC transporter B family member 9 1004 1025 - -
Trre16g04863 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 715 1001 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre16g04863 1282 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Trre16g04863 1282 ProSitePatterns ABC transporters family signature. 1176 1190 IPR017871 GO:0005524|GO:0016887
Trre16g04863 1282 Gene3D - 376 634 IPR027417 -
Trre16g04863 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1025 1273 IPR027417 -
Trre16g04863 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1036 1273 IPR003439 GO:0005524
Trre16g04863 1282 FunFam ABC transporter B family member 1 368 617 - -
Trre16g04863 1282 FunFam ABC transporter B family member 9 43 374 - -
Trre16g04863 1282 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Trre16g04863 1282 FunFam ABC transporter B family member 1 694 1002 - -
Trre16g04863 1282 SUPERFAMILY ABC transporter transmembrane region 702 1020 IPR036640 GO:0005524|GO:0016020
Trre16g04863 1282 MobiDBLite consensus disorder prediction 617 667 - -
Trre16g04863 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 616 IPR027417 -
Trre16g04863 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04863 Trre-Chr16 52589219 52594294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04863 8 1276 Calmodulin-binding Proteins AT2G36910 44.062 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04863 K05658 - gmx:100800293 1917.51