Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04857 ATGGTGATATTGAACCTTGGAAAGAAGCAGAATAAGAAGTTGCATGGTGAAGAAGAAGGAGTGAAACTTGGGAAATATGAGTTGGGTAGGATTCTTGGTGAGGGTAATTTCGGTAAAGTTAAGTTTGCTAGGAACACTGATTCTAAACAACCTTATGCTATTAAGATTATTGACAAGAACAAGATCATTGATCTCAATATCACCAACCAGATAAAGAGGGAAATAGGTGCCTTAAAGCTCCTAAGGCATCCCAATGTTGTTAAACTATACGAGGTCTTGGCTAGTAAAACAAAAATTTACGAGCGCAGCTTTGCTCCAGTTTTGGTAGCTCTAGTTATGCCTAGCAAGGCTATGAGAAGAGCTCACTATTGCGTTTTACTGTTATCTATTGGAATTGGAATGGAAACTGGCAACAGCCAACATCGGCGAGTGGAAGGTGTGAGGCATAACAGGAGCTACCAAAACTGGAGCAAAGCCGCGCTCAAAATTTACATGGTACTTGAGTACGTGACTGGAGAGGAGTTATTTGACAAAATTGCATCCAAGGGTAAACTTACTGAAGGTGAAGGTAGAAAGCTGTTTCACCAGTTGATTGATGGTGTGAGCCACTGCCACAGTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTACTTGTGGATGTCAAAGGGAATCTAAAGATAACCGATTTTGGTCTTAGTGCTTTACCCCAACAGTTTAGGGCAGATGGATTGCTGCATACAACATGTGGAAGTCCAAATTATGTTGCACCAGAGATTCTTGCTAATAGGGGCTATAATGGTGCATCATCAGATGTATGGGCATGTGGTGTTATCTTGTATGTAGTCCTAGCAGGATACCTTCCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAGAAGGTTTTGAAAGGAGATTTTCAAATGCCAAAATGGTTATCACCTGGTGCACAAAACATTATAAAGAGGATTCTTGATCCAAACCCTCAAACTAGAATAACAATGGCGGGGATCAAAGAAGATTTGTGGTTCAAGGAAGGATATAATCAAGCAGATCTTGAAGACGAGGAGGAAGATGTATACGTTGACAATCAAGCTTTTTCCGCCCGTGAACTGTCACATGAAGAAGAAAAAATGAGTTTAGAATCACCAATCCGTATGAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAGTGAGGATGTATCTGAGAGGAAGATAAGGTTTACAGCTAATCTTTCAGCCAAAGATCTGATGACAAAGATTGAAAATTCTGCGACAGAAATGAAATTTAGAGTTCAAAAGAAAAATGGCAAAATGAAAGTGATACAAGAGAACAAGGAGCATAAAACTCTTGGCAGCCTCTCAGTGGCAATAGAGGTTTTTGAAATAAGTTCATCATTGTATGTAGTAGAATTAAGGAAGTGTCATGGAGATGCCTCTGTATATAGACAGTTATGCAAGAAGTTATTAAATGATTTGAGTGTTCCCCAAGGAAAGCACTAA 1533 0.3966 MVILNLGKKQNKKLHGEEEGVKLGKYELGRILGEGNFGKVKFARNTDSKQPYAIKIIDKNKIIDLNITNQIKREIGALKLLRHPNVVKLYEVLASKTKIYERSFAPVLVALVMPSKAMRRAHYCVLLLSIGIGMETGNSQHRRVEGVRHNRSYQNWSKAALKIYMVLEYVTGEELFDKIASKGKLTEGEGRKLFHQLIDGVSHCHSKGVFHRDLKLENVLVDVKGNLKITDFGLSALPQQFRADGLLHTTCGSPNYVAPEILANRGYNGASSDVWACGVILYVVLAGYLPFDDRNLAVLYQKVLKGDFQMPKWLSPGAQNIIKRILDPNPQTRITMAGIKEDLWFKEGYNQADLEDEEEDVYVDNQAFSARELSHEEEKMSLESPIRMNAFQLIGMSSCLDLSGFFESEDVSERKIRFTANLSAKDLMTKIENSATEMKFRVQKKNGKMKVIQENKEHKTLGSLSVAIEVFEISSSLYVVELRKCHGDASVYRQLCKKLLNDLSVPQGKH 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04857 510 ProSiteProfiles NAF domain profile. 383 407 IPR018451 GO:0007165
Trre16g04857 510 FunFam Non-specific serine/threonine protein kinase 385 506 - -
Trre16g04857 510 FunFam Non-specific serine/threonine protein kinase 170 352 - -
Trre16g04857 510 CDD CIPK_C 389 500 - -
Trre16g04857 510 SUPERFAMILY Protein kinase-like (PK-like) 18 364 IPR011009 -
Trre16g04857 510 Gene3D Kinase associated domain 1, KA1 383 505 - -
Trre16g04857 510 Gene3D Phosphorylase Kinase; domain 1 17 101 - -
Trre16g04857 510 ProSitePatterns Protein kinases ATP-binding region signature. 32 55 IPR017441 GO:0005524
Trre16g04857 510 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 16 488 - -
Trre16g04857 510 SMART serkin_6 26 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04857 510 FunFam Non-specific serine/threonine protein kinase 17 101 - -
Trre16g04857 510 Pfam Protein kinase domain 26 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04857 510 Pfam Protein kinase domain 160 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04857 510 Pfam NAF domain 387 444 IPR004041 GO:0007165
Trre16g04857 510 Gene3D Transferase(Phosphotransferase) domain 1 170 372 - -
Trre16g04857 510 ProSiteProfiles Protein kinase domain profile. 26 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04857 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04857 Trre-Chr16 52533193 52538867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04857 162 503 CBL-interacting serine-threonine protein kinases AT3G17510 67.930 3.09e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre16g04857 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04857 K07198 - sind:105156798 563.148