Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04852 ATGGCGTCTGATCTGAGCTCAAGGTTGTCAAAAAAAACATCTGTTTTTGGGTTGGAAGCATGGGAATTAATGGGGCTAATAGTTGGTTTATTCATTGTAATCATTCTTCTAGTGTTATCGATATGTCTTACTTCAAAAAAGAAATCCAGAAGAGTCAATGGCATGCTTCCACTTAGCCACAGGTTATCTGTTTCAGAAGAGATTAAAGAGATTAGCATTGATCAGGTTTCAACAAATAGTCGTCCTCAGAATGGCGCTTTTACGAGTCTTTACGACAAATTTAGCGACAAAGATTCCGAAAAGATTTTGCTCCAAACGAAGAATGGGGAATATAACAGCCAATCAGGCTCGTTTATTCACATCGAGAAAGATGCTGCTGGTTCTCAATCAGGTGAAGAAAATGGTGCCAAATCCCTTTCTGCACACAGGCTTTCTTTGACTTCACCGTCGCCTCTGTCTGGTCTTCCTGAATTCTCTCACCTTGGCTGGGGGCACTGGTTTACATTGAGGGACCTAGAACTCGCAACAAACAAGTTTTCAAAAGCGAATATTATTGGTGAAGGAGGATATGGAGTTGTTTATCAAGGCCAGTTGATCAATGGGAATCCAGTAGCTATTAAGAAGCTACTAAATAATCTTGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGTCATGTGAGGCACAAGAACTTGGTTAGACTTTTGGGTTTTTGCATTGAAGGCACTCACAGGTTGTTGGTTTATGAGTATGTTAACAATGGAAATTTAGAGCAATGGCTTCATGGAGCCATGCAGCAATATGGTTTTCTCACATGGGATGCTCGTATTAAAATTCTTCTTGGAACAGCTAAAGCGCTGGCTTACTTGCACGAAGCAATTGAGCCAAAAGTTGTCCATCGAGATATTAAGTCGAGTAATATTCTAATCGATGATGACTTCAATGCCAAAATATCCGACTTTGGACTAGCCAAGTTACTTGGTGCAGGAAAAAGTCACATTACGACTCGAGTAATGGGTACTTTTGGATATGTTGCTCCAGAATATGCCAATTCTGGCTTACTAAACGAGAAGAGTGATGTTTATAGCTATGGCGTATTGCTCCTTGAAGCAATTACTGGAAGAGACCCAGTGGATTATAGCCGCTCAGCCGCTGAGGTAAATTTGGTCGATTGGCTGAAGATGATGGTAGGTAATAGGCACGCAGAAGAGGTGGTAGACCCAAACATTGAAACCAGACCATCAACAAGCGCACTTAAACGAGTCCTGTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAAAAAAGACCCAAAATGAGTCAAGTGGTCCGCATGCTTGAATCAGAAGAATATCCTATACCTAGAGAGGATCGAAGACGCAGGAAAAGTAATGCCACAAATACTGATGTGGAGACGCAGAAGGAGATTTCTGATACAGAGAAGAGCGATCATCCAGATTCCAAGTCCAGCGGAAGAAATGTAAGAAAAAATCAGCGAAAGTAA 1515 0.4145 MASDLSSRLSKKTSVFGLEAWELMGLIVGLFIVIILLVLSICLTSKKKSRRVNGMLPLSHRLSVSEEIKEISIDQVSTNSRPQNGAFTSLYDKFSDKDSEKILLQTKNGEYNSQSGSFIHIEKDAAGSQSGEENGAKSLSAHRLSLTSPSPLSGLPEFSHLGWGHWFTLRDLELATNKFSKANIIGEGGYGVVYQGQLINGNPVAIKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGFCIEGTHRLLVYEYVNNGNLEQWLHGAMQQYGFLTWDARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKISDFGLAKLLGAGKSHITTRVMGTFGYVAPEYANSGLLNEKSDVYSYGVLLLEAITGRDPVDYSRSAAEVNLVDWLKMMVGNRHAEEVVDPNIETRPSTSALKRVLLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREDRRRRKSNATNTDVETQKEISDTEKSDHPDSKSSGRNVRKNQRK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04852 504 PANTHER OS01G0323000 PROTEIN 5 480 - -
Trre16g04852 504 Pfam Protein kinase domain 180 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04852 504 MobiDBLite consensus disorder prediction 438 504 - -
Trre16g04852 504 ProSiteProfiles Protein kinase domain profile. 179 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04852 504 FunFam Putative receptor-like protein kinase 161 254 - -
Trre16g04852 504 Gene3D Phosphorylase Kinase; domain 1 160 254 - -
Trre16g04852 504 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524
Trre16g04852 504 Gene3D Transferase(Phosphotransferase) domain 1 255 468 - -
Trre16g04852 504 SUPERFAMILY Protein kinase-like (PK-like) 163 460 IPR011009 -
Trre16g04852 504 MobiDBLite consensus disorder prediction 438 497 - -
Trre16g04852 504 CDD STKc_IRAK 185 451 - -
Trre16g04852 504 SMART serkin_6 179 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04852 504 FunFam Putative receptor-like serine/threonine-protein kinase 255 466 - -
Trre16g04852 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04852 Trre-Chr16 52487530 52490526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04852 17 453 Trihelix Transcription Factor Family AT1G70460 40.045 3.66e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre16g04852 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04852 - - gmx:100793499 842.032