Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04851 ATGGGTTGCTTTGGTTTCTGCAAAGAGAATGATTCTTACACAACTGCTGACAAAGGAATCTACATGCAAAACAATCCTGCAGGGAACTCAAGTTATCATGGAAGACACACACCAATAACCGTTCCTCGGCCTATAAATCTTCAACCTATTTCTGTCCCTTCTGTTACAGTAGATGAATTAAGGTCTTTGACAGATAATTTTGGTACAAAGACTTTCATCGGTGAGGGTGCATACGGAAAAGTATATCGCGCTATATTGAAAAATGGACGCGAAGTGGCAATTAAAAAGTTGGATTCCACTAAACAGCCAGACCAAGAATTTCTTTCTCAGGTCTCCATCGTATCAAGGCTAAAGCATGAAAATGTTGTTGAGCTTGTTACTTATTGTGTCGATGGTCCTTTGCGTGCCCTTGCGTATGAGTATGCTCCTAATGGATCCCTTCATGATATTCTACATGGACGCAAAGGTGTGAAGGGTGCAGAACCTGGTCAAGTTCTGACATGGGCTCAAAGAGTTAAAATTGCTGTTGGAGCAGCCAGAGGGCTTGAATATCTTCATGAAAAGGCGGAGGTTCATATTGTCCATCGTTACATTAAATCTAGTAACATACTTCTATTTGAGGACGATGTTGCTAAGATTGCTGATTTTGATCTGTCGAATCAAGCCCCCGATGCTGCAGCACGTCTTCATTCTACCCGTGTTCTTGGAACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGAAACCTCAGTTCAAAGAGTGATGTATACAGTTTTGGAGTCATACTGTTGGAACTCTTAACTGGGCGTAAACCTGTTGATCATACACTTCCCCGGGGACAGCAAAGCCTCGTGACATGGGCAACACCAAAACTTAGTGAAGATAAGGTGAAACAGTGTGTTGATGTTAGACTAAAGGGAGAGTACCCTTCCAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCACTGTGTGTTCAATATGAGGCCGAGTTTCGACCAAATATGAGCATCATTGTCAAAGCTTTACAGCCTCTGATGAATAATACTCGTCCTGCTCAATCAAGGGAACCACGCAACTTGTAA 1086 0.4254 MGCFGFCKENDSYTTADKGIYMQNNPAGNSSYHGRHTPITVPRPINLQPISVPSVTVDELRSLTDNFGTKTFIGEGAYGKVYRAILKNGREVAIKKLDSTKQPDQEFLSQVSIVSRLKHENVVELVTYCVDGPLRALAYEYAPNGSLHDILHGRKGVKGAEPGQVLTWAQRVKIAVGAARGLEYLHEKAEVHIVHRYIKSSNILLFEDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGNLSSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLMNNTRPAQSREPRNL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04851 361 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04851 361 SUPERFAMILY Protein kinase-like (PK-like) 46 343 IPR011009 -
Trre16g04851 361 CDD STKc_IRAK 73 346 - -
Trre16g04851 361 FunFam pto-interacting protein 1 143 355 - -
Trre16g04851 361 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Trre16g04851 361 Gene3D Transferase(Phosphotransferase) domain 1 142 359 - -
Trre16g04851 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 7 350 - -
Trre16g04851 361 Gene3D Phosphorylase Kinase; domain 1 39 141 - -
Trre16g04851 361 Pfam Protein tyrosine and serine/threonine kinase 71 343 IPR001245 GO:0004672|GO:0006468
Trre16g04851 361 PIRSF ILK 8 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04851 Trre-Chr16 52483936 52486084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04851 48 344 Receptor kinase-like Gene Family AT4G02010 49.502 5.36e-89 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Trre16g04851 PK_Tyr_Ser-Thr 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04851 K13436 - gmx:547595 625.55