Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04841 ATGCCAAAGGAATATCGAATCAACATTCGTCCATTAATGGATGATCGACGGCAGCAAGAACTAGCAGCGTTTATCACTCAAGTAAAAGTTGTGTTTAAAGATAACAAGGAAAAATATTCTGAGTTTGTACAAGTCATGAAGGATTACAAGGATCACAAAACTGGAATATTAAGTGTCGTTGAAATGGGAAACAAGCTGTTTAAGGAACACACTGATTTACTTTTGGAATTCAGCAACTTCATGCCAGATGAATATCAAATCAAACTTCCATTGTATCATGATCATAAACAAGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATAAAGTCAGACATGTGTTTCAAAATAACATGGAAATATATTTTGAGTTTTTACAAGTCATCAATGATCACACGGCTCAAGGAATTGACATAAGAGGTGTAGTGGCAATAGTGAAAGAGCTCTTTAAAGGGCATACAAATTTAATTTTGGGATTCAATGCCTTCCTACCAAAGGAATATAAAATCACACTTCCATTTCAGCTTCATGGTCATAATAAGACAGGGAAAAAAGTGAAGAAGGTAGCAGAGAAATGTCAACTTCCTTGGGATGTCCTTGATATCATTTCCAGAACTCTAGATTTCGATGACCTCTTCGAATTTGCTTGTGTTTGCAAAAAATGGAGGGCATTTCATAAAATTTATTGGAGATTGGCATTTGAAGAACCACTACTTGTTCAAAAGTCTTCCCTTGTTAAGAAATCTTATTCCTTTATCAGCATACCTAACCAAAAAGTTTATCACTCGAAGATGATCAATTATTTTTGGCACTTTGCTTATTCTGGATCTTCTAGCGGATATTTGATCATGACAGGGAACAATAATTCATTTCTGCTAATGAATCCATTTATGAGAAGAAAGAAGGTAATCAATACCTCAACCTTTAAAGTAAATTTTTCTTATTTTGCCTACCATGTCTTGCTTGCTTTTGCAAAAGGCTCCAAGGAATTTGTCTTACTGGCTTTATGTAAAAGTTCTAATAGTTTGCATGTCTATCAATCTCGAAATGTTGGTTGGGTTACATATTCAAAAATGGGATATCCATGGATGATTGTTGACTTTGTTGTTTTGCATAACACTATATATGTTGTCACAAACAAGGGCAACATAGGGGTACTCAACTTAAATTCTGTAAATATAAAATTTCTAGAATTGAAGAGTACTCCTAGTGTAACTTCTTCGTCTCGCCTAAGGTTGGTTAGCTGTGATGGACAACTTTTTGTGGTTCATACTAAGCCCGGTGTAGTGTTTAATGTGTACATGATTGACTTCTCAACTATGAATTATGTCAAATTGGAAACTTTGGATGACATTGCGTTGTTTTATGCTCCGGGGGGAAACTACTATGCACTGAGCAACCCAGAGAGAGAGATGGGGTTATAA 1425 0.3516 MPKEYRINIRPLMDDRRQQELAAFITQVKVVFKDNKEKYSEFVQVMKDYKDHKTGILSVVEMGNKLFKEHTDLLLEFSNFMPDEYQIKLPLYHDHKQGHQLVIKDAFLNKVRHVFQNNMEIYFEFLQVINDHTAQGIDIRGVVAIVKELFKGHTNLILGFNAFLPKEYKITLPFQLHGHNKTGKKVKKVAEKCQLPWDVLDIISRTLDFDDLFEFACVCKKWRAFHKIYWRLAFEEPLLVQKSSLVKKSYSFISIPNQKVYHSKMINYFWHFAYSGSSSGYLIMTGNNNSFLLMNPFMRRKKVINTSTFKVNFSYFAYHVLLAFAKGSKEFVLLALCKSSNSLHVYQSRNVGWVTYSKMGYPWMIVDFVVLHNTIYVVTNKGNIGVLNLNSVNIKFLELKSTPSVTSSSRLRLVSCDGQLFVVHTKPGVVFNVYMIDFSTMNYVKLETLDDIALFYAPGGNYYALSNPEREMGL 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04841 474 Pfam Paired amphipathic helix repeat 37 80 IPR003822 GO:0006355
Trre16g04841 474 Pfam Paired amphipathic helix repeat 120 164 IPR003822 GO:0006355
Trre16g04841 474 ProSiteProfiles PAH domain profile. 89 167 IPR003822 GO:0006355
Trre16g04841 474 FunFam Paired amphipathic helix protein Sin3 105 165 - -
Trre16g04841 474 Gene3D Paired amphipathic helix 106 165 IPR036600 GO:0006355
Trre16g04841 474 Gene3D Paired amphipathic helix 22 82 IPR036600 GO:0006355
Trre16g04841 474 ProSiteProfiles PAH domain profile. 10 84 IPR003822 GO:0006355
Trre16g04841 474 SUPERFAMILY PAH2 domain 18 83 IPR036600 GO:0006355
Trre16g04841 474 ProSiteProfiles F-box domain profile. 189 233 IPR001810 GO:0005515
Trre16g04841 474 SUPERFAMILY PAH2 domain 106 166 IPR036600 GO:0006355
Trre16g04841 474 Pfam F-box domain 194 224 IPR001810 GO:0005515
Trre16g04841 474 PANTHER OS09G0392200 PROTEIN 180 457 IPR044619 -
Trre16g04841 474 SUPERFAMILY Galactose oxidase, central domain 268 450 IPR011043 -
Trre16g04841 474 SUPERFAMILY F-box domain 193 235 IPR036047 GO:0005515
Trre16g04841 474 CDD F-box_SF 194 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04841 Trre-Chr16 52407490 52409166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04841 107 172 WRKY Transcription Factor Family AT4G12020 50.000 1.70e-13 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g04841 PAH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04841 - - cam:101488742 595.89