Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04839 ATGATGGCTCAAACCAGAAATCACATTCAGAATCGGAACCAACAATTAGAGATTGAAGAGATACTACGTGAAGCACAGCATCGCTGGCTTCGACCTGCTGAAATATGTGAGATACTTCGCAATTACCGGAAGTTTGAGTTAACACCGAATCCACCTGTTAGGCCTCCTGCTGGGTCACTATTCTTGTTTGATCGAAAAGTACTCCGGTACTTTCGCAAGGATGGCCACAGGTGGAAGAAGAAAAAAGATGGCAAGACTATAAGAGAAGCTCACGAAAAGTTGAAGGCTGGTAGCGTTGAGGTTTTGCATTGTTACTATGCTCGTGGCGAGGATAATGAAAACTTTCAAAGGAGAATTTATTGGATGCTTGATGAGAAGTTAGAGCACATTGTCCTCGTGCATTATCGAGAAATTGAAGAGGGCTGCAAGTCTGGCATCTCAAATTTGCCTGTAGTTCCAGTAACCCCAGTTGGTAGCTCTCAGAGTAGTTCAGTGCCTTCCTCTGCCAAAATAAGCTCACCAATATCTGTTGTTCAAGTATCTTTGACATCAAGTGCAAATGAAATTGATCAGCACAGAGCTTCTGAGTATGAGGACGACAAGTTACAGAATTGTCCTCAAGTCTCCTCTCATGCTCAATCTACCAGCAATTCCATGCATCATTGTGCACCTCCGCTTTCACTTGAAGCTACTGGGTTTTCTGAGTTATTGAAGAACCCCTTTATTTCAACACGGACATCTCTTCATTGCTTTTCTTCTGGTAATGATGTGCCTCCCTGGGCATTCATTCAGAACTCTAGCAGAAATGGAGTTAATATGTATGATAGAGAACTTCATGTTCAAGGATCAAGTGATGGCCCTGAAGCTTATTTCACTGTAGCACAAAGTAATGCAAGGTTAGATTCAGTTTGCAGGACACAGGATGGTGTAGTTTTAAGAGATAGGCCCATCACTGACGTGTATATGCACCCTATTACAGGAGCTTCACAGACTGTTAATCAGCAATTGAAAAAGGAGCTTGATATAGGCTCAATTCATACCCCATTCAGTGATCATACTGATCATCCAGTTGTTGCGCCTCAAGACGGTGGTGCATACAAAGATGAGTCGGAACATGTTGAGTTTGGGGAATTGAAGAAGCTTGATAGTTTTGGACAGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGCAATTATTGGAATACACTTGATGCTGATAATAAGGATAAGGAGGTGTATAGTTTACGCCAGATGCAGTTGGTTGTGGATTCATTAGGCCCTTCTCTTTCCCTAGAACAGCTATTTAGTATCCACGACTTTTCTCCAGATTGGGCATATTCTGGGGTTAGAACAAAGGTTTTAATAGTTGGCACATTTCTGGGGAGTAAAAAGCTTTCTGGTGAGACCAAATGGGGATGTATGTTCGGCGAAATTGAGGTTTCTGCTGAAGTTTTGACAGAGAATGTTATACGCTGTCAGACTCCTTTGCATTCACCTGGTCGTGTTCCATTCTATGTTACATGCAGTAATCGGTTAGCCTGTAGTGAGGTCAGAGAATTTGAATATCATGAAAATCCATCAAAATTCATAGGTCCCGACATTATTAAAATATCACCGGAAGATGAGGTACAACTTCAAATTCGACTTCTTAGACTAGTAGAATTGGAACCTGACAACAAGTGGTTCAAGTGCTCTGTTCCTGAATGTGAAAAATGTAAACGTATGGAAACAATGTATTCCATGAGAGATGATAGTGAAGTATTTGGAGAAACTTTCAAGATTGATGAACGTGATCATAATAACACTAGAGATGTATTGTTTCAAAGATTAATGAGAGACAAGCTTTATGATTGGTTGGTATTTAAGGTTCATGAAGGAGGAAAAGGACAACATATATTGGATAATGAAGGCCAAGGAGTCTTACATTTAGCAGCTGCACTTGGTTATGTATGGGCTCTGGGGCCATTAGTTGCCGCTGGTATCAGTCCTAACTATAGGGATGCTCATGGAAAAACAGGACTTCACTGGGCTTCATATTTTGGGAGAGAAGAAACGGTAATTGTGTTAGTCAAATTAGGAGCATCCCCAGGGGCCATTGAGGATCCAACATCAGCATTTCCTCGAGGACAAAAAGCAGCCGATTTAGCTTCTAGTAGAGGACATAAAGGAATTGCTGGGTATTTGGCTGAAGCAGATCTAACAAGTCAATTGTCTATGTTAACTGTCAATGAAAATGATATGTACAACATTGCCACAACTGCAGCAGTTGACAGTACTTTTGAGTCTGTTGACAGTGACTCGTCTTATCTGACTATGGATGAGCAGCACGGTCTGAAAGAGTCACTTGCTGCTTTCCGAAAATCAGCCCATGCAGCTGCTTTGATCCAAGAAGCCTTTAGGGCAAAATCATTTTGTCAAAGACAATTAACCAAGAGTAGTGATGATATTTCTGAAGATGTACTTAATGTAGTCGCTGATTCTTTGAACAAGGTTCAGAAGATAGGCCACTTCGAGGATTATTTACATTTTGCAGCTTTAAGGATTCAAAAGAAATATCGTGGGTGGAAAGGAAGAAAAGATTTTTTGAAAACACGCAACCGCATAATAAAAATTCAGGCTCATTTTAGAGGACACCAAGTTCGTAAGCAGTACAAAAAAGTTATTTGGTCTGTTAGCATCGTAGAAAAGGCAATACTGCGTTGGAGGCGGAAAGGAGCTGGTCTGCGAGGGTTCCGGGTTGGGCAGCCAGTTGGTATCATGGCAAAAGATGCTGAAAATAGTGACGACGAGTATGACTTTCTTAGCATTGGACGGAAACAGAAATCAGATGATGTAAGGAAAGCTCTTGATAGAGTTAAGTCCATGGTTCGTAATCCAGAGGCAAGGGATCAATATATGAGGCTAATCATGAAATATCAGAATTTTAAGATTGATTATGGCGGAACCAGTCAATCACAGCATGTTGACTAG 2997 0.4117 MMAQTRNHIQNRNQQLEIEEILREAQHRWLRPAEICEILRNYRKFELTPNPPVRPPAGSLFLFDRKVLRYFRKDGHRWKKKKDGKTIREAHEKLKAGSVEVLHCYYARGEDNENFQRRIYWMLDEKLEHIVLVHYREIEEGCKSGISNLPVVPVTPVGSSQSSSVPSSAKISSPISVVQVSLTSSANEIDQHRASEYEDDKLQNCPQVSSHAQSTSNSMHHCAPPLSLEATGFSELLKNPFISTRTSLHCFSSGNDVPPWAFIQNSSRNGVNMYDRELHVQGSSDGPEAYFTVAQSNARLDSVCRTQDGVVLRDRPITDVYMHPITGASQTVNQQLKKELDIGSIHTPFSDHTDHPVVAPQDGGAYKDESEHVEFGELKKLDSFGQWMDKEIGGDCDNSLMASDSGNYWNTLDADNKDKEVYSLRQMQLVVDSLGPSLSLEQLFSIHDFSPDWAYSGVRTKVLIVGTFLGSKKLSGETKWGCMFGEIEVSAEVLTENVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYHENPSKFIGPDIIKISPEDEVQLQIRLLRLVELEPDNKWFKCSVPECEKCKRMETMYSMRDDSEVFGETFKIDERDHNNTRDVLFQRLMRDKLYDWLVFKVHEGGKGQHILDNEGQGVLHLAAALGYVWALGPLVAAGISPNYRDAHGKTGLHWASYFGREETVIVLVKLGASPGAIEDPTSAFPRGQKAADLASSRGHKGIAGYLAEADLTSQLSMLTVNENDMYNIATTAAVDSTFESVDSDSSYLTMDEQHGLKESLAAFRKSAHAAALIQEAFRAKSFCQRQLTKSSDDISEDVLNVVADSLNKVQKIGHFEDYLHFAALRIQKKYRGWKGRKDFLKTRNRIIKIQAHFRGHQVRKQYKKVIWSVSIVEKAILRWRRKGAGLRGFRVGQPVGIMAKDAENSDDEYDFLSIGRKQKSDDVRKALDRVKSMVRNPEARDQYMRLIMKYQNFKIDYGGTSQSQHVD 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04839 998 FunFam Calmodulin-binding transcription activator 2 439 536 - -
Trre16g04839 998 FunFam Calmodulin-binding transcription activator 2 849 897 - -
Trre16g04839 998 Pfam CG-1 domain 24 137 IPR005559 GO:0003677
Trre16g04839 998 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
Trre16g04839 998 Gene3D - 848 897 - -
Trre16g04839 998 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Trre16g04839 998 ProSiteProfiles IQ motif profile. 850 879 IPR000048 GO:0005515
Trre16g04839 998 SMART CG_1_2 21 139 IPR005559 GO:0003677
Trre16g04839 998 ProSiteProfiles CG-1 DNA-binding domain profile. 18 144 IPR005559 GO:0003677
Trre16g04839 998 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 17 984 - -
Trre16g04839 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 900 IPR027417 -
Trre16g04839 998 Gene3D Immunoglobulins 439 537 IPR013783 -
Trre16g04839 998 Gene3D - 620 743 IPR036770 -
Trre16g04839 998 Pfam IPT/TIG domain 446 531 IPR002909 -
Trre16g04839 998 ProSiteProfiles Ankyrin repeat region circular profile. 678 704 - -
Trre16g04839 998 Pfam IQ calmodulin-binding motif 875 894 IPR000048 GO:0005515
Trre16g04839 998 Pfam IQ calmodulin-binding motif 853 870 IPR000048 GO:0005515
Trre16g04839 998 CDD IPT 445 533 - -
Trre16g04839 998 SMART iq_5 849 871 IPR000048 GO:0005515
Trre16g04839 998 SMART iq_5 872 894 IPR000048 GO:0005515
Trre16g04839 998 SUPERFAMILY E set domains 446 531 IPR014756 -
Trre16g04839 998 SUPERFAMILY Ankyrin repeat 634 740 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04839 Trre-Chr16 52394286 52401874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04839 378 994 CAMTA Transcription Factor Family AT5G64220 42.722 1.87e-158 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre16g04839 CG-1 2.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04839 K21596 - gmx:100818336 1475.3