Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04820 ATGGTAGCAGAAGCCGAAATTATATGTCAACAAACCATTTCTATGTTGGATGTAAAGTATCATCTTTGTGTTGCACAAGAACACAACGTCAAAGTTGAGATTTCACCTACCTCTCCTACACCTTCTCTTCCAATCTTTGCCCATGCTGTGAGTTGCTCCGAGATCATTAAAGATTCCATGTTGGAGACCCCGGCGAAGATGTTTATCCCAAATGTGCGTTCTGGTAGCTGTGCCGATATTGGACCAAGGGGATCTATGGATGATGAGCACATTCAGATAGATGATCTAGCTTGTCACCTTGGATTTGTGTTCAAATACCCGATACCAAGTGCGTTTTATGCGGTTTTTGATGGGCACGGCGGACCTGAAGCTGCTTCCTTTGTTAAGAGGAATGCTATGAGGTTATTGTTTGAAGATGTTGATATGCTACAATCATATGATTCATACAGCACTGATGCGTGTTTTTTAGAGAAGTTGGAGGACTCTCATAGGAGAGCTTTTATAAGGGCAGATCTTGCCTTGGCACATGAACAAAGTGTTAGTAGTTCATGTGGGACTACAGCACTTACTGCCCTTGTACTCGGAAGACATTTGCTTGTTGCTAATGCCGGTGACTGTCGAGCAGTTCTTTGCAGGAGAGGTGCAGCTGTTGAGATGTCTCATGATCACAAACCAAATTATTTACCTGAACGAAGGAGAGTGGAGGAGATAGGCAGCTACATTGATGATGGGTATCTTAACGGTTATCTCTCAGTAACTCGTGCCCTCGGGGATTGGGACTTAAAATTTCCACTTGGTGCTGCATCTCCTCTTATTGCCGAGCCAGATGTTCAACTGGTTACATTGACAGAAGAGGATGAGTTCTTGATCATTGCGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGTGGATTAAGAAGGCACAACGACCCAAATCAAAGTGCCAGAGATTTAGTCAAGGAAGCACTGCGCCTGAATACATCCGATAATCTCACTGTGATAGTTATATGTTTGTCACCTGTTGAAAAGTTTGCTGAATCATGTCCACCCCAGAGACGAAGATTCAAAGCTTGCAGTATTTCTGAAGAGGCTCGTAATAGATTGAAGAGCTTGATAGAGGGAAATTGA 1152 0.4349 MVAEAEIICQQTISMLDVKYHLCVAQEHNVKVEISPTSPTPSLPIFAHAVSCSEIIKDSMLETPAKMFIPNVRSGSCADIGPRGSMDDEHIQIDDLACHLGFVFKYPIPSAFYAVFDGHGGPEAASFVKRNAMRLLFEDVDMLQSYDSYSTDACFLEKLEDSHRRAFIRADLALAHEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGAAVEMSHDHKPNYLPERRRVEEIGSYIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVQLVTLTEEDEFLIIACDGIWDVMSSQVAVSLVRRGLRRHNDPNQSARDLVKEALRLNTSDNLTVIVICLSPVEKFAESCPPQRRRFKACSISEEARNRLKSLIEGN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04820 383 SMART PP2C_SIG_2 88 346 IPR001932 -
Trre16g04820 383 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Trre16g04820 383 SUPERFAMILY PP2C-like 67 348 IPR036457 -
Trre16g04820 383 SMART PP2C_4 63 344 IPR001932 -
Trre16g04820 383 FunFam Probable protein phosphatase 2C 22 57 349 - -
Trre16g04820 383 Gene3D - 59 352 IPR036457 -
Trre16g04820 383 PANTHER PROTEIN PHOSPHATASE 2C 65 344 IPR015655 GO:0004722|GO:0006470
Trre16g04820 383 CDD PP2Cc 72 346 IPR001932 -
Trre16g04820 383 ProSiteProfiles PPM-type phosphatase domain profile. 73 346 IPR001932 -
Trre16g04820 383 Pfam Protein phosphatase 2C 81 338 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04820 Trre-Chr16 52210265 52211983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04820 1 382 PP2C-type Phosphatase Gene Family AT1G48040 55.696 1.07e-142 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04820 K14803 - gmx:100775577 649.818