Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04816 ATGGATGTAAAGGGAAGAGGAAACCAAAACAACCTTATGATGAGTAGTAGTGAAGAGGATGAAATGGACCTTAGAAGAGGCCCATGGACCGTGGATGAGGACCTAACCCTCATCAATTACATTGCTACTCATGGTGAAGGTCGTTGGAATACCCTAGCCAACTCTTCTGGTCTCAAACGAACAGGTAAGAGTTGTAGATTGAGGTGGTTGAACTATCTTCGACCTGATGTTAGACGTGGAAATATTACACTCGAAGAACAACTTTTGATCCTCGAGCTCCATACTCGTTGGGGTAACAGATGGTCAAAAATAGCCCAATATTTACCCGGAAGAACAGATAATGAAATAAAGAATTATTGGAGAACTCGTGTACAAAAGCTTGCAAAACAACTCAAATGTGATATCAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTAGTCGAACGCATTCAAGCAGCTTCCGTCACGACTTCCACCACCACAACTGTCGCCACCAATGCCACATACAACAACGCCAACAATAACCACAGCGGCAAAATGATGGGTTCAACTCCGACAACTACAAACAATGAATTTGTGAGTTCACAACCACTTATGACACAAAGTTATACCCTAGAGAGAAGCAACACAACCACATCATCAGATTCATTTGAGAATAAGGTGTCAACAATATCAGAATTGGGTGATAATAATAATAATAATTATTATTATTACACAAGTTTTGGTCATAAAGATAACCCTAATCCCAATTTAGATTATTATCAACCCTCTCATCAACCGTCGGGATTGTTCTATCCAGAACTCGATTTCCAATCCATGGAACCAAACACGCCGTGGATGCAAAATGGGGACTCATCCGACATTTTTTGGAATTCTGAAAACATGTTGTTTTTACAGCAACAACTCATGAATGACACCATGTAA 942 0.4055 MDVKGRGNQNNLMMSSSEEDEMDLRRGPWTVDEDLTLINYIATHGEGRWNTLANSSGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDINSKQFKDTMRYLWMPRLVERIQAASVTTSTTTTVATNATYNNANNNHSGKMMGSTPTTTNNEFVSSQPLMTQSYTLERSNTTTSSDSFENKVSTISELGDNNNNNYYYYTSFGHKDNPNPNLDYYQPSHQPSGLFYPELDFQSMEPNTPWMQNGDSSDIFWNSENMLFLQQQLMNDTM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04816 313 SMART sant 78 126 IPR001005 -
Trre16g04816 313 SMART sant 25 75 IPR001005 -
Trre16g04816 313 Gene3D - 23 79 - -
Trre16g04816 313 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Trre16g04816 313 CDD SANT 28 73 IPR001005 -
Trre16g04816 313 FunFam Myb transcription factor 26 78 - -
Trre16g04816 313 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Trre16g04816 313 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Trre16g04816 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Trre16g04816 313 CDD SANT 99 122 IPR001005 -
Trre16g04816 313 FunFam MYB transcription factor 83 146 - -
Trre16g04816 313 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Trre16g04816 313 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Trre16g04816 313 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g04816 313 Gene3D - 83 146 - -
Trre16g04816 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Trre16g04816 313 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 210 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04816 Trre-Chr16 52164222 52166285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04816 1 278 MYB Transcription Factor Family AT3G06490 56.584 3.11e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g04816 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04816 K09422 - gmx:100791349 406.757