Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04809 ATGAATGTTTTTCTGTTTGTCCTCCAATTCCTATGTTTCATTCTTCTAAATACCAAATCTTCCTTGTTCATAAAAGCATATGAAATAAATGCTGAAAAAACATATGAATCTGATAGAATAATTGATCTACCAGGACAACCTTCAGCTCCATCTGTCTCACACTTTTCAGGTTACATCACTGTCAATGAAGAACATGGAAGAGCCCTTTTCTATTGGTTCTTTGAAGCTCAATCTGAACCCTCCAATAAGCCTTTGCTTCTATGGCTCAATGGAGGACCTGGATGCTCCTCAATTGGATTTGGTGCTGCTGTTGAGATAGGACCTCTTTTAGTCAACAAAAATGGACAAGGACTATTATTCAACAAACACTCTTGGAATCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCTTTTGGAGTTGGCTTTTCTTACACAAACACTTCTTCTGATCTAACCAATTTAGAGGATCATTTTGTGGCTGAGGATACTTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCACACTTAAAATCTAGAGACTTTTTCATAGCAGGAGAAAGCTATGCTGGCCGCTATATCCCTCAGCTTGCAGAAGTAATCTTTGACATAAACAAAGATAAAAACAAATACTCTTTTATTAATCTTAAAGGTTTTATTGTAAGGAATCCAGAAACTAATGATTACTATGATTATAAAGGCATGGTAGAATATGCTTGGAGTCATGCAGTTATATCAGACCAACATTATGAAAAAGCAAAACAAGTTTGTGATTTTAAATATCAATGGTCTAGTAAGTGCAGCCAGGTCATGGATGAACTCTTCAATGAATATTCAAAAATTGACATATTCAACATTTATGCCCCAGCATGTCGTTTGAATAGTACATCCACAGTAACTAATAATGACACTCAATCACTTATAAAGGTGAAAAATGATAATAGGATGAGAATTTTAGGGGGCTATGATCCTTGTTTTACCAATTATGCAGAAGAATATTTCAATAGGGTAGATGTTCAATCATCTTTTCATGCAAATAAAATAGCATGGAGAGGTTGCAATCAATCCATATTCAAGGCTTACATCGTCAATGTTTTTTCTGTCCTGCCTATCTACACCAAACTCATCAAGGGTGGCCTTAAGATATGGATTTATAGTGGAGATGCAGATGGTAGAGTACCTGCGATAGGGACACGATATTGTGTTGAGGCTTTAGGATTACCTCTGAAGTCTACTTGGAGGCCTTGGTACCATCATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGATTAACATATGTGACAATAAGAGGAGCTGGTCACATGGTGCCTCTCAACAAACCAGCTGAGGCTCTTTCTCTTATTCATTCTTTCCTCACTGGAGACCATCTCCCTACTACATGTTAA 1410 0.3695 MNVFLFVLQFLCFILLNTKSSLFIKAYEINAEKTYESDRIIDLPGQPSAPSVSHFSGYITVNEEHGRALFYWFFEAQSEPSNKPLLLWLNGGPGCSSIGFGAAVEIGPLLVNKNGQGLLFNKHSWNQEANLLFVESPFGVGFSYTNTSSDLTNLEDHFVAEDTYNFLVNWLQRFPHLKSRDFFIAGESYAGRYIPQLAEVIFDINKDKNKYSFINLKGFIVRNPETNDYYDYKGMVEYAWSHAVISDQHYEKAKQVCDFKYQWSSKCSQVMDELFNEYSKIDIFNIYAPACRLNSTSTVTNNDTQSLIKVKNDNRMRILGGYDPCFTNYAEEYFNRVDVQSSFHANKIAWRGCNQSIFKAYIVNVFSVLPIYTKLIKGGLKIWIYSGDADGRVPAIGTRYCVEALGLPLKSTWRPWYHHNQVGGRIVEYEGLTYVTIRGAGHMVPLNKPAEALSLIHSFLTGDHLPTTC 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04809 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 449 IPR001563 GO:0004185|GO:0006508
Trre16g04809 469 FunFam Carboxypeptidase 323 465 - -
Trre16g04809 469 Gene3D alpha/beta hydrolase 34 293 IPR029058 -
Trre16g04809 469 FunFam Carboxypeptidase 34 293 - -
Trre16g04809 469 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Trre16g04809 469 SUPERFAMILY alpha/beta-Hydrolases 32 467 IPR029058 -
Trre16g04809 469 ProSitePatterns Serine carboxypeptidases, histidine active site. 432 449 IPR033124 GO:0004185
Trre16g04809 469 Gene3D - 325 357 - -
Trre16g04809 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Trre16g04809 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 432 445 IPR001563 GO:0004185|GO:0006508
Trre16g04809 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Trre16g04809 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Trre16g04809 469 Pfam Serine carboxypeptidase 44 461 IPR001563 GO:0004185|GO:0006508
Trre16g04809 469 Gene3D - 368 462 - -
Trre16g04809 469 FunFam Carboxypeptidase 368 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04809 Trre-Chr16 52072313 52077400 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04809 350 465 Calmodulin-binding Proteins AT2G22960 34.188 7.32e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04809 K16297 - gmx:100815141 762.681