Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04807 ATGAATGTTTTTGTATTTGTCCTTCAATTCCTATGTTTCATTCTTCTAACTACCAAATACTCCTTGTTCATAAAAGCATATGAAATAAATGCTGAAAAAACATATGAATCTGATAGAATAATTGATCTACCAGGACAACCTTCAGCCCCATCTGTCTCACACTTTTCAGGTTACATCACTGTCAATGAAGAACATGGAAGAGCCCTTTTCTATTGGTTCTTTGAAGCTCAATCTGAACCCTCCAATAAGCCTTTACTTCTATGGCTCAATGGAGGACCTGGATGCTCCTCAATAGGATATGGTGCTGTTGTTGAGATAGGACCTCTTTTAGTCAACAAGAATGGTGAAGGACTATTATTCAATCCAAACTCTTGGAATCAAGAAGCAAATTTATTATTTGTGGAGTCCCCTGTTGGAGTTGGCTTTTCTTACACAAACACTTCTTCTGATCTAACCATTTTAGAGGATCATTTTGTGGCTGAAGATACCTACAATTTCTTGGTCAATTGGCTACAAAAATTTCCACAGTTTAAATCCAGGGATTTTTACATAGCTGGAGAAAGCTATGCTGGCCACTATATCCCTCAGCTTGCAGAAGTAATCTTTGACAGAAACAAAGATAAAAACAATTACTCCTTTATTAATCTTAAAGGTTTTATTGTAGGGAATCCAGAAACTGATGATTATTATGATTATAAAGGCATAGTAGAATATGCTTGGAGTCATTCAGTTATATCAGACCAACATTATGACAAAGTTAAACAAGTTTGTGATTTTAAAAAATCTGAATGGTCTAATGAATGCAATCAAGTCATGAGTGAACTCTTCCATTATTACTCAGAAATTGACATATACAACATTTATGCTCCAGCATGTCTTTCAAATAGTACATCCTCAGTAACAACTATTAATGTCCCTCAATCATTTAAAGAGGTGAAAAATGATTATAGATTCAAGAGGATGAGAATTTTTGGGGGCTATGACCCTTGTTATTCTAATTATGCACAAGAATTTTTCAATAGGGCAGATGTTCAATCATCTTTTCATGCAAAAAATACTATAAGAGATAACAGTAACATAACATGGCAAGTTTGCAATAATTCCATATTGAGGACTTACAACTTCTCTGTTTTTTCTGTCCTTCCTATCTACACCAAACTCATCAAGGGTGGCTTTAAGATATGGATTTATAGTGGAGATACAGATGGTAGATTACCTGTGATAGGGACACGATATGGCATTGAGGCTCTTGGGTTACCTCTAAAGTCCACTTGGAGGTCATGGTACCATAATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGATTGACATATGTGACAGTTAGAGGAGCTGGACACTTAGTGCCTCTCAACAAACCAGCTGAGGCTCTTTCTCTTATTCATTCTTTCCTAACTGGAGACCATCTCCCTACTACACGTTAA 1446 0.361 MNVFVFVLQFLCFILLTTKYSLFIKAYEINAEKTYESDRIIDLPGQPSAPSVSHFSGYITVNEEHGRALFYWFFEAQSEPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLLVNKNGEGLLFNPNSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHFVAEDTYNFLVNWLQKFPQFKSRDFYIAGESYAGHYIPQLAEVIFDRNKDKNNYSFINLKGFIVGNPETDDYYDYKGIVEYAWSHSVISDQHYDKVKQVCDFKKSEWSNECNQVMSELFHYYSEIDIYNIYAPACLSNSTSSVTTINVPQSFKEVKNDYRFKRMRIFGGYDPCYSNYAQEFFNRADVQSSFHAKNTIRDNSNITWQVCNNSILRTYNFSVFSVLPIYTKLIKGGFKIWIYSGDTDGRLPVIGTRYGIEALGLPLKSTWRSWYHNNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPAEALSLIHSFLTGDHLPTTR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04807 481 Gene3D - 380 474 - -
Trre16g04807 481 FunFam Carboxypeptidase 380 474 - -
Trre16g04807 481 SUPERFAMILY alpha/beta-Hydrolases 36 478 IPR029058 -
Trre16g04807 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 195 IPR001563 GO:0004185|GO:0006508
Trre16g04807 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 444 457 IPR001563 GO:0004185|GO:0006508
Trre16g04807 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 134 144 IPR001563 GO:0004185|GO:0006508
Trre16g04807 481 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 133 IPR001563 GO:0004185|GO:0006508
Trre16g04807 481 ProSitePatterns Serine carboxypeptidases, serine active site. 184 191 IPR018202 GO:0004185
Trre16g04807 481 Gene3D - 330 369 - -
Trre16g04807 481 FunFam Carboxypeptidase 34 294 - -
Trre16g04807 481 Pfam Serine carboxypeptidase 44 473 IPR001563 GO:0004185|GO:0006508
Trre16g04807 481 ProSitePatterns Serine carboxypeptidases, histidine active site. 444 461 IPR033124 GO:0004185
Trre16g04807 481 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 461 IPR001563 GO:0004185|GO:0006508
Trre16g04807 481 Gene3D alpha/beta hydrolase 32 303 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04807 Trre-Chr16 52063262 52068206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04807 354 477 Calmodulin-binding Proteins AT2G22960 33.600 1.20e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04807 K16297 - gmx:100815141 813.142