Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04785 ATGAACTACAACCGCCGTAGTCCCGGCGGTTTCCGAGCCGCTCCTCTCCATCGTAATTTTGATAGTCCTCCTAGTTGGTCTCCTGGTAGGGTTGGAGGTGGAGGTTTTCGTCCACTACCTCCCGGAGATGGTTTCAGGCCGATGAGCGGTGAAGGTCATGGTGAATTTGGATTCAATAATCATCAGCCATCGTCGCTGTCTGGTCAGAAACGAGGATTTCCTTTCTCTGGACGTGGTGCTTCACCGGATCGCTTTGACGGTGGAAGTTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGGACAGCATCTGAGGAAGATATTCGTCCTTTGTTTGAGGAACACGGGAATGTCGTTGAGGTCGCCCTAATCAAAGATAGAAAGACAGGACAACATCAAGGTTGTTGTTTTATAAAATACGCTACCTCAGAGGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACCCTTCCCGGAGGTGTTGGTCCCATCCAAGTGCGGTATGCTGATGGCGAACGGGAACGCCTTGGTGCAGTTGAGGTCAAACTATTTGTCGGCTCTCTGAATAAACAGGCTAGCGTAAAAGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAGCAGAGTCGTGGATGTGGTTTTGTCAAATACTCTCATAGAGATATGGCACTGGCAGCTATTAATGCACTTAATGGAATATATACAATGAGAGGTTGCGATCAACCACTGATTGTCCGTTTTGCTGATCCTAAAAGACCCCGTCAAGGAGATTCCAGAGGTCCTGCATTTGGAGCTTCTGGATTTGGTCCTAGATTTGATTCACCGGGCACTAGACTTCCATCAAATAATTCTGATCCTATGGGTGATCATATGCCTCCCCCTAATGCTTGGCGTCCAATTCATCAACCAAACACGGGGCCATCCTTCAATGCTGGTTTTCATGGTATGGGGCCTCCATTGATACCAAGATCCGGCGACATGGCATTGCCTATAAATGCAGGCGGTCCTATGACTGGCATGGGAGTCTCCATAGATGGTCGTTTTCAAGCTCAGTCTCCGTCAGCAATGCCACCACAGAATTTCAACCAGCCTCTACCGAAAATTCCACCAGGCAATCAACAAATACCTCAATCACAGAAACCTATCCACTCATCTCAGGAATTTCCACCTTCACACCAGTTATATCCTCAAGCTCCGATGCCCTACCCACAGACATCGACACTTCCAACTATCAGGCAGCACGGTCAGCCACAACCTCTCTCTGCTGCTCCGCAGGGACCGGGCATAAGTGCACAGTTTTCAGTTTCTCAGCCTCAAACTCAGCAGAGTGTTTTGCCTGCTACATTTCCTCACACCTCTCATGATACCAGCATTCAATCTAATACAACATTGACTACACCAAGTAGACAGCAAATTCCTCCCTCTATGCAGCAGCAGCAACCACAGCCACAGTCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGTTGGTGTCACAACAAACTCAGACTTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCTCAGCTTCAACAACAATTACAGATGATACAACCATCTAGTCAAGCATCGACATTGCAGCATCACACAGAAGCTACTAAAACACAGTCTCAATGGGGTGGGACTGTATCACATGCAGCGACCGGCACTCATGTGGCTGCACCTGCTACTGGTGCTCCTTCATCAACATCTGTTGCTTCTTCTGTACAAGCAATAGGCCAGAACACAACTCTTGCAAAATGTAATTGGACAGAGCATTTATCTCCCGAGGGCTTTAAATACTACTATAACAGTGTGTCTGGGGAAAGCCGGTGGGAGAAACCCGAAGAGTTGACATTATTTGAACAGCAAAAGCAACAGCACAGCCAGTCTGCTCAGCAGTCTCAAATTCAGTCACAGCCTTCAATACCACCCACCCAGCAAATTCCACAAAACCAACAGGTTCAGCCTCAAAGCCATTTCCGAGAACAAGTTCTCCACCATCAACAAATACAGCAACCATCCTCATTCCAGGCGGCATATGGAGTTACAGGTCATCAAAATGTTCAGGAACTTGGTTATAAACATTTACAGTCGTCATTTGTTTCTGCTGGTGATTCTGGACGTTATTCACAGGGTATTAATACTACACAAGAGCTAATGTGGAAAAACAGGCCTGCAGGTTCTAGTCCTTGA 2244 0.4679 MNYNRRSPGGFRAAPLHRNFDSPPSWSPGRVGGGGFRPLPPGDGFRPMSGEGHGEFGFNNHQPSSLSGQKRGFPFSGRGASPDRFDGGSFAKLFVGSVPRTASEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEVKLFVGSLNKQASVKEVEEVFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPAFGASGFGPRFDSPGTRLPSNNSDPMGDHMPPPNAWRPIHQPNTGPSFNAGFHGMGPPLIPRSGDMALPINAGGPMTGMGVSIDGRFQAQSPSAMPPQNFNQPLPKIPPGNQQIPQSQKPIHSSQEFPPSHQLYPQAPMPYPQTSTLPTIRQHGQPQPLSAAPQGPGISAQFSVSQPQTQQSVLPATFPHTSHDTSIQSNTTLTTPSRQQIPPSMQQQQPQPQSLQPLQQSPSQLAQLVSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQASTLQHHTEATKTQSQWGGTVSHAATGTHVAAPATGAPSSTSVASSVQAIGQNTTLAKCNWTEHLSPEGFKYYYNSVSGESRWEKPEELTLFEQQKQQHSQSAQQSQIQSQPSIPPTQQIPQNQQVQPQSHFREQVLHHQQIQQPSSFQAAYGVTGHQNVQELGYKHLQSSFVSAGDSGRYSQGINTTQELMWKNRPAGSSP 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04785 747 CDD WW 603 633 IPR001202 GO:0005515
Trre16g04785 747 PANTHER RNA BINDING PROTEIN 53 528 - -
Trre16g04785 747 SUPERFAMILY RNA-binding domain, RBD 76 176 IPR035979 GO:0003676
Trre16g04785 747 MobiDBLite consensus disorder prediction 638 685 - -
Trre16g04785 747 MobiDBLite consensus disorder prediction 1 84 - -
Trre16g04785 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 250 IPR000504 GO:0003723
Trre16g04785 747 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 156 IPR000504 GO:0003723
Trre16g04785 747 Pfam WW domain 605 631 IPR001202 GO:0005515
Trre16g04785 747 SUPERFAMILY RNA-binding domain, RBD 183 283 IPR035979 GO:0003676
Trre16g04785 747 MobiDBLite consensus disorder prediction 543 564 - -
Trre16g04785 747 Gene3D - 180 270 IPR012677 -
Trre16g04785 747 Gene3D - 88 179 IPR012677 -
Trre16g04785 747 SMART ww_5 601 633 IPR001202 GO:0005515
Trre16g04785 747 MobiDBLite consensus disorder prediction 384 508 - -
Trre16g04785 747 FunFam Flowering time control protein FCA 178 268 - -
Trre16g04785 747 FunFam flowering time control protein FCA isoform X2 85 177 - -
Trre16g04785 747 SUPERFAMILY WW domain 605 637 IPR036020 GO:0005515
Trre16g04785 747 MobiDBLite consensus disorder prediction 262 319 - -
Trre16g04785 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 172 IPR000504 GO:0003723
Trre16g04785 747 SMART rrm1_1 183 258 IPR000504 GO:0003723
Trre16g04785 747 SMART rrm1_1 92 168 IPR000504 GO:0003723
Trre16g04785 747 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 262 IPR000504 GO:0003723
Trre16g04785 747 MobiDBLite consensus disorder prediction 360 508 - -
Trre16g04785 747 ProSiteProfiles WW/rsp5/WWP domain profile. 606 633 IPR001202 GO:0005515
Trre16g04785 747 ProSitePatterns WW/rsp5/WWP domain signature. 606 631 IPR001202 GO:0005515
Trre16g04785 747 Gene3D - 600 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04785 Trre-Chr16 51911921 51920921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04785 89 268 Eukaryotic Initiation Factors Gene Family AT1G71770 25.510 6.37e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04785 - - tpra:123920645 1248.03