Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04781 ATGAAAACAAAACAGTGTGAAAAGAGAGAGAAGCAAAGTGATCAAGACATGGCGAATTCTTCGGCAGCAGCATTTCTGGATGAGATTCCAAACAAGAAGAACAAAGAAAGTTCCATAATCAATTTCCCTTTCTCACCAGCTTTACCATCATGCAGCATCTTTGATATGATACCCCCACCATCACAATCTGATGATCATCATAAAAAACCTTCTTCCTTTGGTTACATAGACTTGTTAACTTCACAAGATTTCACTACTTCTTCAACTTTATTCGATTGGTTCCCCACCATTGATCCTGACTTGCAGCTGCCTCCTCTTCCGATACCGTCCCCGACCGCAACTTCTGAGGTTTTGAACAATCCTGCCACCCCTGTCTCTCTTTCATCGTCGATTTCTTCATCTTCCCATGAAGCTGGTGCTGTTGCTAACAAATCAGTAATAGCAGTAGCAGAGAATGAAGATGGACTTGAATTTGAAGATGGAGTAGCTGAACCAGATGAGAAAAATGGAGATCGTGGGATCAGATTTGTTGAGAATCAAAATCAGACCAAGAAACAGGTGGTGAAACCTGCAAAGAAGAGGAAGAACACTAAGCAAAGACAACCAAGAATTACTTTCAAGACAAGGACCGATGTTGATCATTTGGATGATAGTTATAGGTGGCGCAAGTATGGTCAAAAACCTGTCAAAAACAGCCCTTATCCAAGGAGCTATTACCGTTGCACTGCAATTGGTTGTGAGGTGAAGAAGCGTATTGAGCGTTCGGCCACTGAAGCTTCCGTGGTGCTAACCAGCTATGAAGGCCATCACAACCACATATCTCCGGCTACCTTGCGTGCTGCTAACTTTGGGATCATGAATAATCCTTCTGGTTTCCAAGAACAGGTTCACCAACACCACAATATAACTGGTGGTGTTGGTGATGATGTTGTTGGAAACCAAGTTGCAATGTCTCAATCACAACAGCAACAATTTCAGGATCAGAATCAGAATGTGCGTCAGCAGCAGCAAGCAGTGCCATCTTTGTTATATAATAATGACTATAACAACTCCTTCAACACTTCTCCACCTGTGAGTGTTGTTAACTCTGCTGATAATTTTATGGACTCTTCAGCATCTTTGCGTGCGTTGCTTCAAAATCAACAGAACTATGGTGAAGATATTCGGGTGAGGAACAATGGACTTCTTCAGGACATGATTGTGCCAATGGAGATGGGACGAGCTAGAGCTAGAGCTGGAGTTGGAGAAGGAACTTCAAGAACATGA 1266 0.4265 MKTKQCEKREKQSDQDMANSSAAAFLDEIPNKKNKESSIINFPFSPALPSCSIFDMIPPPSQSDDHHKKPSSFGYIDLLTSQDFTTSSTLFDWFPTIDPDLQLPPLPIPSPTATSEVLNNPATPVSLSSSISSSSHEAGAVANKSVIAVAENEDGLEFEDGVAEPDEKNGDRGIRFVENQNQTKKQVVKPAKKRKNTKQRQPRITFKTRTDVDHLDDSYRWRKYGQKPVKNSPYPRSYYRCTAIGCEVKKRIERSATEASVVLTSYEGHHNHISPATLRAANFGIMNNPSGFQEQVHQHHNITGGVGDDVVGNQVAMSQSQQQQFQDQNQNVRQQQQAVPSLLYNNDYNNSFNTSPPVSVVNSADNFMDSSASLRALLQNQQNYGEDIRVRNNGLLQDMIVPMEMGRARARAGVGEGTSRT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04781 421 MobiDBLite consensus disorder prediction 157 211 - -
Trre16g04781 421 ProSiteProfiles WRKY domain profile. 210 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g04781 421 MobiDBLite consensus disorder prediction 1 15 - -
Trre16g04781 421 Gene3D WRKY domain 200 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g04781 421 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g04781 421 SUPERFAMILY WRKY DNA-binding domain 208 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g04781 421 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 117 329 IPR044810 GO:0003700
Trre16g04781 421 Pfam WRKY DNA -binding domain 216 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g04781 421 SMART WRKY_cls 215 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g04781 421 FunFam WRKY transcription factor 57 201 275 - -
Trre16g04781 421 MobiDBLite consensus disorder prediction 187 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04781 Trre-Chr16 51885962 51887853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04781 165 280 WRKY Transcription Factor Family AT4G18170 55.932 1.21e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g04781 WRKY 3.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04781 - - mtr:11409051 451.44