Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04779 ATGACATCACCATCTACAACAACACCAAACATAGTAACAAACACAGACTCAAAAAGAAAGAAAAGAAAAAACAGAGCACAGAAAAATCTTCAAGATCAGCTTCAAAACACTCACCCAAAATGGAAATCTCAAGCACAACAACAAATCTACTCCAACAAACTCCGTCAAGCCTTAACAAGAGTCAACACACGCCGTGGAAAAGCCGTCAGAGAAGCCGCCGATAAAGCACTAGCCATGACAGCTAAAGGAAGAACTCGATGGAGCAGAGCCATTTTAACAACCAGGCTCAAACTCAAGTTTAGAAAGAAGAAACAGAAACAGAGACTAACGGCATCACCGTTAAATCGATCAAAGAAGTCAAGAATCAACGTTTTACGGTTGAAGGGGAAGGTGGTTCCTAGTGTGCAGAGGAAAGTAAAGTTTCTTGGAGGATTGGTTCCTGGTTGCAAAAAGGAACCATTACCGGTTATTTTGGAAGAAGCTATTGATTATATACCTGCGCTTGAGATGCAGTTAGTGATTGCACAAGATCCAAATCGGTGTATGTACTACGTATCTATGTTATGGTCCTCATGGTGA 579 0.4111 MTSPSTTTPNIVTNTDSKRKKRKNRAQKNLQDQLQNTHPKWKSQAQQQIYSNKLRQALTRVNTRRGKAVREAADKALAMTAKGRTRWSRAILTTRLKLKFRKKKQKQRLTASPLNRSKKSRINVLRLKGKVVPSVQRKVKFLGGLVPGCKKEPLPVILEEAIDYIPALEMQLVIAQDPNRCMYYVSMLWSSW 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04779 192 MobiDBLite consensus disorder prediction 1 42 - -
Trre16g04779 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 181 IPR036638 GO:0046983
Trre16g04779 192 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 173 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04779 Trre-Chr16 51846073 51848013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04779 4 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06590 44.550 4.59e-43 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04779 - - gmx:100803765 196.438