Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre16g04778 | ATGGATTCTGGAAACCCTGCATCAACTCCCGATTCACCAACCTCACCATCTGTTGGTTTCAACACCGATCAACTTCCTCACACTCACACTAGTCGTGCTTCTGAAGACGACGAAGCTTCCGTTGATCCCGATATCATTCGTGACGAACCTGAACCGGAAGAAGATGAAGATGGAGAAGATCTCTACAATGACAATTTTCTGGAGGATTATCGGAGGATGGATGAAGCTGATCAGTTTGAATCGGTTGGATTGGACGATTCGGTCGAAGATGAGAGAGATTTTGATCAGATCATGGAGGATCGCAGGGCTGCTGAAATTGAACTGGATAATCGTGATGGTCGTACTTCCAATCGCAGTAAACTTCCTCAGCTTCTCCACGACCAGGATACTGATGATGACAGTTATAGGCCTTCTAAAAGGGCCAGAGCTGATCACAGGTCTTCTGTACCGAGCGATGATGATCTTGATGGCATGAATAGTTCACCTGGAAGGTCACCAAGAAGACACTCAAGGGAGGATAATCCAACTACTGATCAAAACGATGATGATCAATATGATGATGATTTTGATGATGAAGCTGGGTATGAGATGTACCGTGTTCAAGGAACTCTTAGAGAATGGGTTACAAGAGATGAAGTGCGCCGATTCATAGCGAGAAAGTTCAAAGATTTCTTACTCACTTATGTCAATCCAAAGAATGAACATGGGGACTTTGAATATGTGCGTCTGATAAATGAAATGGTGTCAGCTAACAAGTGCAGTTTGGAGATAGATTACAAGCAATTTATCTACGTCCATCCCAACATTGCCATTTGGCTGGCTGATGCACCTCATTCTGTTTTAGAAGTTATGGAAGATGTTGCTAAAAGCGTTGTCTTTCAATTACATCCAAATTACAAACATATACATCAAAAGATTTATGTGCGCATTACCAACTTACCAGTTTATGATCAGATTCGAAATATTAGACAGATCCATTTGAATACAATGATCCGAATTGGAGGAGTTGTAACCAGGCGCTCTGGAGTTTTCCCCCAGTTGCAACAGGTGAAGTATGACTGTAACAAATGTGGGGCAATTTTAGGACCTTTTTTCCAGAATTCCTATTCAGAGGTGAAAGTTGGTTCCTGTCCCGAGTGTCAATCAAAAGGACCATTCAGTGTCAATATTGAACAGACAATTTACAGGAATTTTCAAAAGCTCACTCTTCAAGAGAGCCCAGGAATTGTTCCTGCAGGGCGACTGCCAAGATACAAGGAAGTGATACTGTTGAATGATCTGATTGACTGTGCTCGACCTGGAGAAGAGATTGAGGTCACAGGTGTTTATACTAATAACTTCGACTTGTCTCTAAACACAAAGAATGGTTTTCCAGTGTTTTCCACTGTTGTCGAGGCAAATTATGTTACAAAGAAGCAAGATCTCTTCTCTGCCTACAAACTTACACAGGAAGACAAAGAAGAGATTGAAAATTTGGGCAAAGACCCCCGAATTGGAGAAAGGATTGTCAAGTCTATTGCACCATCAATCTATGGTCATGATGATATAAAAACTGCAATAGCTTTAGCTATGTTTGGAGGTCAAGAAAAGAATGTTGAAGGGAAACATCGGCTGCGAGGAGACATAAATGTTCTCCTTCTCGGTGATCCAGGAACAGCAAAGTCTCAATTTCTAAAGTATGTCGAAAAAACTGGACAGAGAGCTGTATACACCACTGGCAAAGGAGCTTCTGCTGTGGGTCTCACTGCTGCAGTTCACAAGGATCCAGTCACAAGGGAATGGACCCTTGAGGGGGGAGCCCTTGTTCTAGCTGACAGAGGAATTTGTCTCATTGATGAATTTGACAAGATGAATGACCAGGATCGGGTAAGTATCCATGAAGCCATGGAGCAGCAAAGCATAAGCATATCGAAAGCTGGAATTGTCACATCTCTTCAAGCACGCTGTTCTGTCATTGCTGCTGCCAATCCAATTGGAGGAAGATATGATTCCTCAAAATTGTTTACTCAAAACGTTGAATTGACAGATCCTATTATTTCTCGTTTTGACGTCCTCTGCGTTGTGAAGGACGTGGTTGATCCAGTCACTGATGAAATGCTTGCGAAGTTTGTTGTTGACAGTCACTTCAAATCACAACCCAAGGGTGCTAACAATGATGATAAGTCTGTGAGTGAGTCCCAAGATGCATCTGGCATGCCAACTGACCCGGAGATACTTCCTCAAGATCTGCTGAAGAAGTACATTACATATGCCAAGTTGAATGTTTTCCCAAGGTTACATGATGCTGATTTGGAGAAACTGACACATGTATATGCAGAGCTGCGAAGGGAATCATCTAACGGACAAGGAGTCCCCATTGCAGTAAGGCACATTGAATCAATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGACAGCATGTCACACAAGAGGATGTGGACATGGCTATTCGTGTTCTACTTGATTCATTCATTTCAACCCAAAAGTTTGGGGTGCAGAAGGCACTCCAAAAGAGTTTTAGAAAGTACATGACTTTCAAGAAGGACTATAATGATATGCTCATTTATATTCTCCGCGGGCTTGTAAACAATGCTTTGCAGTTCGAAGGAATTGCCACTGGATCTATATCAAATCTAACACACATAGATGTCAAAGTAGATGATCTCTATGCTAAGGCTCAAGAGTATGATATATCTGATCTGACACCGTTCTTCAACAGCAGGAAATTTTCAGATGCCAATTTTGTATATGATGATGAACGACGAGTGATCAGACATCACCTTGCTAGGTGA | 2799 | 0.4212 | MDSGNPASTPDSPTSPSVGFNTDQLPHTHTSRASEDDEASVDPDIIRDEPEPEEDEDGEDLYNDNFLEDYRRMDEADQFESVGLDDSVEDERDFDQIMEDRRAAEIELDNRDGRTSNRSKLPQLLHDQDTDDDSYRPSKRARADHRSSVPSDDDLDGMNSSPGRSPRRHSREDNPTTDQNDDDQYDDDFDDEAGYEMYRVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHGDFEYVRLINEMVSANKCSLEIDYKQFIYVHPNIAIWLADAPHSVLEVMEDVAKSVVFQLHPNYKHIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFSVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFSTVVEANYVTKKQDLFSAYKLTQEDKEEIENLGKDPRIGERIVKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHKDPVTREWTLEGGALVLADRGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKLFTQNVELTDPIISRFDVLCVVKDVVDPVTDEMLAKFVVDSHFKSQPKGANNDDKSVSESQDASGMPTDPEILPQDLLKKYITYAKLNVFPRLHDADLEKLTHVYAELRRESSNGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLDSFISTQKFGVQKALQKSFRKYMTFKKDYNDMLIYILRGLVNNALQFEGIATGSISNLTHIDVKVDDLYAKAQEYDISDLTPFFNSRKFSDANFVYDDERRVIRHHLAR | 932 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre16g04778 | 932 | Gene3D | - | 346 | 396 | - | - | |
| Trre16g04778 | 932 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 204 | 868 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | FunFam | DNA helicase | 211 | 315 | - | - | |
| Trre16g04778 | 932 | SMART | mcm | 315 | 827 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | SUPERFAMILY | Nucleic acid-binding proteins | 220 | 467 | IPR012340 | - | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 64 | 79 | - | - | |
| Trre16g04778 | 932 | Gene3D | - | 211 | 315 | - | - | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 124 | 152 | - | - | |
| Trre16g04778 | 932 | CDD | MCM2 | 501 | 825 | - | - | |
| Trre16g04778 | 932 | Gene3D | - | 319 | 444 | IPR012340 | - | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 716 | 731 | - | - | |
| Trre16g04778 | 932 | Pfam | MCM AAA-lid domain | 742 | 826 | IPR041562 | - | |
| Trre16g04778 | 932 | Gene3D | - | 478 | 849 | IPR027417 | - | |
| Trre16g04778 | 932 | Pfam | MCM P-loop domain | 486 | 708 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | Pfam | Mini-chromosome maintenance protein 2 | 36 | 190 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 539 | 554 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 627 | 640 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 599 | 613 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 651 | 663 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 678 | 686 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Trre16g04778 | 932 | FunFam | DNA helicase | 478 | 849 | - | - | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 41 | 63 | - | - | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 1 | 190 | - | - | |
| Trre16g04778 | 932 | Pfam | MCM OB domain | 318 | 445 | IPR033762 | - | |
| Trre16g04778 | 932 | ProSiteProfiles | MCM family domain profile. | 498 | 704 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Trre16g04778 | 932 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 508 | 829 | IPR027417 | - | |
| Trre16g04778 | 932 | Pfam | MCM N-terminal domain | 219 | 312 | IPR027925 | - | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 94 | 116 | - | - | |
| Trre16g04778 | 932 | FunFam | DNA helicase | 346 | 396 | - | - | |
| Trre16g04778 | 932 | MobiDBLite | consensus disorder prediction | 711 | 737 | - | - | |
| Trre16g04778 | 932 | ProSitePatterns | MCM family signature. | 607 | 615 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 351 | 363 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 386 | 400 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 328 | 345 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 447 | 458 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 | |
| Trre16g04778 | 932 | PRINTS | Mini-chromosome maintenance (MCM) protein 2 signature | 462 | 473 | IPR008045 | GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre16g04778 | Trre-Chr16 | 51829611 | 51834569 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre16g04778 | 19 | 927 | Core DNA Replication Machinery Family | AT1G44900 | 75.956 | 0.0 | 1367 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre16g04778 | K02540 | - | gmx:100799441 | 1615.51 |