Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04771 ATGATGGGAAGTGAAGAAAGAGAGAAAGTAGTGAAGAAGAAGATCCAAGAGTTAGAAGAAGAACATGCTTTCATGAAACAAGAAATGTCAAAGCTTAAAGTTAATGATGGTAAAGAACAACAACAACATCGTCAAAGGTCTCACTCTGTGTCTCCTCAACGTTCTAGATTAGGTTCATGGAACAAAGGTTCTTGTTCTTTCAAACACTCATCACCTCTCAGAAAGGAAACTCATGCTCATACTCATACACTCATCAATTTCACTGAAAAACATTATCTCAATATTTTGCACTCTTTGGGCCATTCTGTTCATATCTTGGATCTTAACTCTCGTATCATTTATTGGAACCGTAGTGCTGAAAATCTGTATGGTTATGCAGAAGAGGAAGTTTTGGGACAGGATGGGGTTGATTTGCTTGTGGACTCTAGGGATTGGGGGTTAGCTCATGATACAGTTAATTGTGTCATGAATGGAGAAAGATGGAGTGGTCAATTCCTAGTCAAGAATAAGAAAGGAGATAGCTTTTTAGCTGTAACAACCAATACTCCTTTTTACGATGATGGAAACTTAGTTGGGATTATCTGTGTGTCGAGTGATTCACGGCCGTTTCTTGAAATGAGGGCTCCGTTTTTTGGTGTAAAGAATGCTGAATCGGATCATGGTTCTATGCGTCGTAGCAATAGTGTTGCAAATAAACTTGGCTTTGATTCTCAGCAGCCACTTCAATCTGCTATAGCATCTAAATTTTCAAATTTGGCGTCAAAGATGAGTAACAAAGTTAAGTCGAGAATCTGGACGGGAGAAAATAATGTGGATCGTGAAGGTGGGAATGGAAAAAGTTATCATTCTGAAGTTGGTTTCTCGGAACACCGAGAAGATGCTAATTCTAGTGGAGCTACGACACCTAGAGGTGATTTGCCACAGTCCCCTCCTGGTGTATTTTATCGTGTTGAAGAAAAGTTTGAAGGAAAAACTTTGAGAGATTCTGGTGATGAGAGTGAAGGAAAACCTGTTCACAAAATTTTACCTACTAAGGCTGAAGCCTGGATTCAAAAGAAAACATTATCGTGGCCATGGAGAACAAATGACCGAGATGAGTCAGAGGCAAGAAATGTTCATGCTGCTGATCTGTGGAGGCAGAATGATCAAGAAAATGAATCAGTTAATCAGAAGAATATTTCTTCTGGCTTGAAGCACGAAAGCCTGGCCGGGGAAAGTAATCGCCTTACTAACAACGAGGCTTCATTATCCCGTTCTTCCTCTTATAATGTTATTCTTAACAGCACGAGTAGCGCTAGCAGCTCTGGGAGTGCTGGCAGTGGTGCTGTAAATAGTAAAGTGGATGTAGACTCTGATTGTTTGGATTATGAAATATTGTGGGAGGATTTGACAATTCGAGAACAAATTGGACAGGGCTGTTGTGGAACTGTGTACCATGCTCTGTGGTATGGATCAGATGTTGCTGTCAAGGTTTTCTCAAAGCAAGAGTATTCATATGATTTGATACAGTCCTTCAGGCAAGAGGTATCTGTCATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGAGCAGTGACTTCACCACAACGTCTCTGCATTGTTACAGAGTTTCTCCCACGTGGAAGCTTGTGTCGCTTGTTACATAGAAACACGCCCAAACTTGACTGGAGACGGCGAGTTCATATGGCTTTGGATATTGCACGAGGAGTAAATTATCTTCATCATTATAACCCGCCTATCATTCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAATTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGTCTTAAGCACGAAACATATCTCACAACTAAGACAGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAACGAACCGTCAGATGAGAAGTCTGATGTATACAGCTTCGGGGTGATATTATGGGAACTTGCGACTGAAAAGATTCCTTGGGATAATCTCAACGCAATGCAGGTAATTGGCGCTGTAGGGTTCATGAATCAGCGTCCCGAAATTCCAAAAGATGTTGATCCAGGATGGGCTTCTTTAATTGAGATCTGCTGGCACAGTGATCCAACTTGCCGACCAACTTTCCCGGAACTGCTCGAAAGGCTTAAAGAGTTACAAAAACAGTATGTCATTCAGTTCCAGGCGGCCCGGTCTGCTGGTGGAGAAAGCATCCAACGAAAGGAGTCCTAG 2229 0.4168 MMGSEEREKVVKKKIQELEEEHAFMKQEMSKLKVNDGKEQQQHRQRSHSVSPQRSRLGSWNKGSCSFKHSSPLRKETHAHTHTLINFTEKHYLNILHSLGHSVHILDLNSRIIYWNRSAENLYGYAEEEVLGQDGVDLLVDSRDWGLAHDTVNCVMNGERWSGQFLVKNKKGDSFLAVTTNTPFYDDGNLVGIICVSSDSRPFLEMRAPFFGVKNAESDHGSMRRSNSVANKLGFDSQQPLQSAIASKFSNLASKMSNKVKSRIWTGENNVDREGGNGKSYHSEVGFSEHREDANSSGATTPRGDLPQSPPGVFYRVEEKFEGKTLRDSGDESEGKPVHKILPTKAEAWIQKKTLSWPWRTNDRDESEARNVHAADLWRQNDQENESVNQKNISSGLKHESLAGESNRLTNNEASLSRSSSYNVILNSTSSASSSGSAGSGAVNSKVDVDSDCLDYEILWEDLTIREQIGQGCCGTVYHALWYGSDVAVKVFSKQEYSYDLIQSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGVNYLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNAMQVIGAVGFMNQRPEIPKDVDPGWASLIEICWHSDPTCRPTFPELLERLKELQKQYVIQFQAARSAGGESIQRKES 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04771 742 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 199 IPR035965 -
Trre16g04771 742 CDD PAS 103 199 IPR000014 -
Trre16g04771 742 Gene3D Transferase(Phosphotransferase) domain 1 542 729 - -
Trre16g04771 742 SUPERFAMILY Protein kinase-like (PK-like) 452 715 IPR011009 -
Trre16g04771 742 FunFam PAS domain-containing protein tyrosine kinase family protein 541 732 - -
Trre16g04771 742 Gene3D Phosphorylase Kinase; domain 1 456 540 - -
Trre16g04771 742 SMART pas_2 90 157 IPR000014 -
Trre16g04771 742 FunFam PAS domain-containing protein tyrosine kinase 456 540 - -
Trre16g04771 742 Coils Coil 1 35 - -
Trre16g04771 742 MobiDBLite consensus disorder prediction 381 404 - -
Trre16g04771 742 ProSiteProfiles Protein kinase domain profile. 463 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04771 742 MobiDBLite consensus disorder prediction 289 312 - -
Trre16g04771 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Trre16g04771 742 Pfam PAS fold 91 197 IPR013767 GO:0006355
Trre16g04771 742 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 232 721 - -
Trre16g04771 742 MobiDBLite consensus disorder prediction 26 62 - -
Trre16g04771 742 CDD STKc_MAP3K-like 469 715 - -
Trre16g04771 742 ProSiteProfiles PAS repeat profile. 88 159 IPR000014 -
Trre16g04771 742 Pfam Protein tyrosine and serine/threonine kinase 463 715 IPR001245 GO:0004672|GO:0006468
Trre16g04771 742 PRINTS Tyrosine kinase catalytic domain signature 537 550 IPR001245 GO:0004672|GO:0006468
Trre16g04771 742 PRINTS Tyrosine kinase catalytic domain signature 686 708 IPR001245 GO:0004672|GO:0006468
Trre16g04771 742 PRINTS Tyrosine kinase catalytic domain signature 642 664 IPR001245 GO:0004672|GO:0006468
Trre16g04771 742 PRINTS Tyrosine kinase catalytic domain signature 576 594 IPR001245 GO:0004672|GO:0006468
Trre16g04771 742 PRINTS Tyrosine kinase catalytic domain signature 623 633 IPR001245 GO:0004672|GO:0006468
Trre16g04771 742 MobiDBLite consensus disorder prediction 46 62 - -
Trre16g04771 742 SMART serkin_6 463 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04771 742 MobiDBLite consensus disorder prediction 26 45 - -
Trre16g04771 742 Gene3D PAS domain 101 202 - -
Trre16g04771 742 MobiDBLite consensus disorder prediction 376 404 - -
Trre16g04771 742 NCBIfam PAS domain S-box protein 89 199 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04771 Trre-Chr16 51771207 51776527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04771 13 732 MAP Kinase Kinase Kinase AT3G06620 57.687 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre16g04771 PK_Tyr_Ser-Thr 5.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04771 - - gmx:100785569 1093.18