LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g04746	ATGGCAAATATCTTATCTGGTCAACTAGTGGGATCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTTGCGAGCATTATGGAGGAAGCAAGAACAAGATGGCTTCGTCCCAATGAGATTCATGCTATGCTTTGTAATCACAAGTATTTCACCATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGGACTATTGTATTATTTGACCGCAAAAAGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGTCAAGATAGCCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTTTGGAACACATTGTCCTAGTTCATTACCGTGAAACACAAGAGTCTCAGGGTTCTCCCATCACTCCCGTACATTCAAACTCTACTACTGCCTCTGACCCAACTGCACCGTGGATTTTGTCAGAAGAAATAGATTCAGGGACCAAAACTCCATATGCTGGTGAGATTAATGACAATACAACAGTCAAAAGTCATGAACTGAGGCTTCATGAACTTAACACACTTGAATGGGATGACCTAGTGGTTGCAAACGATCTTAACACCTCTACTGTGCCTAATGGAGGAAAACTTCCATATTTTGATCAACAAAATCAAATTTCACTGAATGGCAGTTTTAGCAATGTAGCCAACAATGCATCTGCAGGAATTAATTCTTTCGATAATTCAACTCAGCCAATTGCAGCAAGCAATAGTGTTCCATACAGTTTTTCAGGTGTTACTCTTCAGACAATTTACAATCAAGGAAATCAAAATGACCAGAATAATCATCATGTATCTTCAAGTGGTGTTGATTCGTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGATTCTGCTCTGGGATCCTCAGTTACACCCGTTAATGAACCATATTCATCTCTGGATGTGGATAATCAGCAACTTTCTCATCCAGAACAAGTATTTAATCTCACCGATGTGTCCCCTGTGTGGGTGTCTTCCACAGAAAAATCAAAGATTCTAGTGACTGGACTCTTTCATAAAGACTATTTGCATCTCCCAAAGTCCAATCTAATGTGTGTCTGTGGTGATGCAAGTGTTCCTGTAGAAATTGTTCAGGATGGGGTCTACCGATGTTGGGTACCACCGCATTCTCCGGGATTCGTGAATCTCTACTTGAGCTTTGATGGTCATAATCCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCACGACCCAGTTGCTTCTATGGAAGAGAAGAACTGGGATGAGTTTCGACTTCAAATGAGACTTGCTTATTTGCTCTTTGCTAAACAGCAGAGTCTTGATGTCATCTCTAGTAAAGTATCACCTAGTAGACTAAAGGAGGCAAGAGAATTCTCCTTAAAGACATCGTTTATTTCTAATACTTGGCAACACTTATTGAAGTCAACTTTAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCACTGTTTGGAATAGCATTGAAAAACAGATTAAAGGAATGGCTTTCAGAAAAAATTGTTTTAGGATATAAGACTACTGAATATGACGCACAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGAATATACATGGGCTGTTACTTTATTTTCATGGTCAGGCTTGTCACTAGATTTTCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTATTGTCAGCTGGGGCAAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATGTACTGCCGCTGATCTTGCTTATACAAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTTTAGTTGAGCAATTCAATGACATGAGCTTAGCGGGAAATATCAGTGGCTCACTGGAAACCAGCACGGATGATCCAGTAAATTCTGAGAACCTTACCGAGGAACAGCTCTACCTTAAAGATACATTGGCAGCTTATCGCACAGCCGCCGATGCAGCAGCACGCATACAAGAAGCATATAGGCAGCATTCCTTAAAGTTACAAACTGAGGCGGTTGAGCTTTCCAATCCGGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTCCGCAATTTTGAAACAAAGAAAGTGATGGCTGCCGCTGCTCGCATACAACATAGATTCCGTACATGGAAGATTCGTAGAAATTTTCTCAACATGCGCCGTCAGGCTATCAAGATTCAAGCTGCTTTCAGGTCCTTTCAACAACGGAAACATTATCGTAAAATCCTTTGGTCAGTTGGTGTGGTTGAGAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGTTTCCGCGGGCTCCAGCTTAATACTGAGGAAGCAAATGGAGATCAGAATCAGCAAAGTGATGCTGAGGAAGAATTCTTTCGTACTAGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGATTATAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGAGAGTATGAAAAAGTGCTTAGTAATGAAGTTGACATGGAAATGAAGACCCAGTTTCGCCGAAGATCTTAG	2781	0.4103	MANILSGQLVGSEIHGFHTLQELDVASIMEEARTRWLRPNEIHAMLCNHKYFTINVKPMNLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDSPNFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVHSNSTTASDPTAPWILSEEIDSGTKTPYAGEINDNTTVKSHELRLHELNTLEWDDLVVANDLNTSTVPNGGKLPYFDQQNQISLNGSFSNVANNASAGINSFDNSTQPIAASNSVPYSFSGVTLQTIYNQGNQNDQNNHHVSSSGVDSLNTLVNDRLQSQDSFGMWVNQIMSDSPCSVDDSALGSSVTPVNEPYSSLDVDNQQLSHPEQVFNLTDVSPVWVSSTEKSKILVTGLFHKDYLHLPKSNLMCVCGDASVPVEIVQDGVYRCWVPPHSPGFVNLYLSFDGHNPISQVVNFEYRTPVLHDPVASMEEKNWDEFRLQMRLAYLLFAKQQSLDVISSKVSPSRLKEAREFSLKTSFISNTWQHLLKSTLDNQIPFSQAKDALFGIALKNRLKEWLSEKIVLGYKTTEYDAQGQSVIHLCAILEYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIQEAYRQHSLKLQTEAVELSNPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQHRFRTWKIRRNFLNMRRQAIKIQAAFRSFQQRKHYRKILWSVGVVEKAVLRWRLKRKGFRGLQLNTEEANGDQNQQSDAEEEFFRTSRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEKVLSNEVDMEMKTQFRRRS	926

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g04746	926	SMART	iq_5	869	891	IPR000048	GO:0005515
	Trre16g04746	926	SMART	iq_5	766	788	IPR000048	GO:0005515
	Trre16g04746	926	SMART	iq_5	789	811	IPR000048	GO:0005515
	Trre16g04746	926	ProSiteProfiles	Ankyrin repeat region circular profile.	603	631	-	-
	Trre16g04746	926	SMART	CG_1_2	28	146	IPR005559	GO:0003677
	Trre16g04746	926	Pfam	IQ calmodulin-binding motif	792	811	IPR000048	GO:0005515
	Trre16g04746	926	Gene3D	-	764	814	-	-
	Trre16g04746	926	Pfam	CG-1 domain	31	144	IPR005559	GO:0003677
	Trre16g04746	926	ProSiteProfiles	Ankyrin repeat profile.	603	635	IPR002110	GO:0005515
	Trre16g04746	926	ProSiteProfiles	CG-1 DNA-binding domain profile.	25	151	IPR005559	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g04746	Trre-Chr16	51621011	51628743	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre16g04746	28	903	CAMTA Transcription Factor Family	AT3G16940	55.114	0.0	945

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	CAMTA	Trre16g04746		Ank_2	8.8e-07	CL0465

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g04746	K21596		-	gmx:100793970	1499.57

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