Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04746 ATGGCAAATATCTTATCTGGTCAACTAGTGGGATCAGAGATACATGGATTCCACACATTGCAAGAGCTGGATGTTGCGAGCATTATGGAGGAAGCAAGAACAAGATGGCTTCGTCCCAATGAGATTCATGCTATGCTTTGTAATCACAAGTATTTCACCATCAATGTCAAGCCAATGAATTTGCCCAAAAGTGGGACTATTGTATTATTTGACCGCAAAAAGCTTCGGAACTTTAGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATTCATGTATATTATGCACATGGTCAAGATAGCCCAAACTTTGTTCGTAGATGTTATTGGCTGCTTGATAAGAGTTTGGAACACATTGTCCTAGTTCATTACCGTGAAACACAAGAGTCTCAGGGTTCTCCCATCACTCCCGTACATTCAAACTCTACTACTGCCTCTGACCCAACTGCACCGTGGATTTTGTCAGAAGAAATAGATTCAGGGACCAAAACTCCATATGCTGGTGAGATTAATGACAATACAACAGTCAAAAGTCATGAACTGAGGCTTCATGAACTTAACACACTTGAATGGGATGACCTAGTGGTTGCAAACGATCTTAACACCTCTACTGTGCCTAATGGAGGAAAACTTCCATATTTTGATCAACAAAATCAAATTTCACTGAATGGCAGTTTTAGCAATGTAGCCAACAATGCATCTGCAGGAATTAATTCTTTCGATAATTCAACTCAGCCAATTGCAGCAAGCAATAGTGTTCCATACAGTTTTTCAGGTGTTACTCTTCAGACAATTTACAATCAAGGAAATCAAAATGACCAGAATAATCATCATGTATCTTCAAGTGGTGTTGATTCGTTAAACACTTTGGTCAATGACAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCAAATCATGTCTGATTCCCCTTGTTCAGTTGATGATTCTGCTCTGGGATCCTCAGTTACACCCGTTAATGAACCATATTCATCTCTGGATGTGGATAATCAGCAACTTTCTCATCCAGAACAAGTATTTAATCTCACCGATGTGTCCCCTGTGTGGGTGTCTTCCACAGAAAAATCAAAGATTCTAGTGACTGGACTCTTTCATAAAGACTATTTGCATCTCCCAAAGTCCAATCTAATGTGTGTCTGTGGTGATGCAAGTGTTCCTGTAGAAATTGTTCAGGATGGGGTCTACCGATGTTGGGTACCACCGCATTCTCCGGGATTCGTGAATCTCTACTTGAGCTTTGATGGTCATAATCCTATCAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTGTTTTGCACGACCCAGTTGCTTCTATGGAAGAGAAGAACTGGGATGAGTTTCGACTTCAAATGAGACTTGCTTATTTGCTCTTTGCTAAACAGCAGAGTCTTGATGTCATCTCTAGTAAAGTATCACCTAGTAGACTAAAGGAGGCAAGAGAATTCTCCTTAAAGACATCGTTTATTTCTAATACTTGGCAACACTTATTGAAGTCAACTTTAGACAACCAAATTCCATTTTCACAAGCAAAAGATGCACTGTTTGGAATAGCATTGAAAAACAGATTAAAGGAATGGCTTTCAGAAAAAATTGTTTTAGGATATAAGACTACTGAATATGACGCACAAGGCCAAAGTGTCATCCATTTGTGTGCAATTTTGGAATATACATGGGCTGTTACTTTATTTTCATGGTCAGGCTTGTCACTAGATTTTCGGGATAAATTTGGATGGACTGCTCTTCATTGGGCAGCATATTACGGCAGGGAGAAAATGGTTGCAACTTTATTGTCAGCTGGGGCAAAGCCAAATTTGGTCACAGATCCAACTCACCAAAACCCTGGTGGATGTACTGCCGCTGATCTTGCTTATACAAGGGGTTATCATGGCTTAGCAGCTTATCTTTCGGAAAAGTCTTTAGTTGAGCAATTCAATGACATGAGCTTAGCGGGAAATATCAGTGGCTCACTGGAAACCAGCACGGATGATCCAGTAAATTCTGAGAACCTTACCGAGGAACAGCTCTACCTTAAAGATACATTGGCAGCTTATCGCACAGCCGCCGATGCAGCAGCACGCATACAAGAAGCATATAGGCAGCATTCCTTAAAGTTACAAACTGAGGCGGTTGAGCTTTCCAATCCGGAAGCTGAAGCACGCAAAATAGTTGCAGCAATGAAGATTCAGCATGCCTTCCGCAATTTTGAAACAAAGAAAGTGATGGCTGCCGCTGCTCGCATACAACATAGATTCCGTACATGGAAGATTCGTAGAAATTTTCTCAACATGCGCCGTCAGGCTATCAAGATTCAAGCTGCTTTCAGGTCCTTTCAACAACGGAAACATTATCGTAAAATCCTTTGGTCAGTTGGTGTGGTTGAGAAAGCAGTGTTGCGTTGGCGTTTAAAGAGAAAGGGTTTCCGCGGGCTCCAGCTTAATACTGAGGAAGCAAATGGAGATCAGAATCAGCAAAGTGATGCTGAGGAAGAATTCTTTCGTACTAGTAGGAAACAAGCTGAAGAACGTGTTGAGAGAAGTGTAATACGAGTGCAGGCTATGTTCCGTTCTAAGAAAGCACAAGAAGATTATAGGAGGATGAAGTTGGCCCTTAATCAAGCAAAGCTGGAACGAGAGTATGAAAAAGTGCTTAGTAATGAAGTTGACATGGAAATGAAGACCCAGTTTCGCCGAAGATCTTAG 2781 0.4103 MANILSGQLVGSEIHGFHTLQELDVASIMEEARTRWLRPNEIHAMLCNHKYFTINVKPMNLPKSGTIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDSPNFVRRCYWLLDKSLEHIVLVHYRETQESQGSPITPVHSNSTTASDPTAPWILSEEIDSGTKTPYAGEINDNTTVKSHELRLHELNTLEWDDLVVANDLNTSTVPNGGKLPYFDQQNQISLNGSFSNVANNASAGINSFDNSTQPIAASNSVPYSFSGVTLQTIYNQGNQNDQNNHHVSSSGVDSLNTLVNDRLQSQDSFGMWVNQIMSDSPCSVDDSALGSSVTPVNEPYSSLDVDNQQLSHPEQVFNLTDVSPVWVSSTEKSKILVTGLFHKDYLHLPKSNLMCVCGDASVPVEIVQDGVYRCWVPPHSPGFVNLYLSFDGHNPISQVVNFEYRTPVLHDPVASMEEKNWDEFRLQMRLAYLLFAKQQSLDVISSKVSPSRLKEAREFSLKTSFISNTWQHLLKSTLDNQIPFSQAKDALFGIALKNRLKEWLSEKIVLGYKTTEYDAQGQSVIHLCAILEYTWAVTLFSWSGLSLDFRDKFGWTALHWAAYYGREKMVATLLSAGAKPNLVTDPTHQNPGGCTAADLAYTRGYHGLAAYLSEKSLVEQFNDMSLAGNISGSLETSTDDPVNSENLTEEQLYLKDTLAAYRTAADAAARIQEAYRQHSLKLQTEAVELSNPEAEARKIVAAMKIQHAFRNFETKKVMAAAARIQHRFRTWKIRRNFLNMRRQAIKIQAAFRSFQQRKHYRKILWSVGVVEKAVLRWRLKRKGFRGLQLNTEEANGDQNQQSDAEEEFFRTSRKQAEERVERSVIRVQAMFRSKKAQEDYRRMKLALNQAKLEREYEKVLSNEVDMEMKTQFRRRS 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04746 926 SMART iq_5 869 891 IPR000048 GO:0005515
Trre16g04746 926 SMART iq_5 766 788 IPR000048 GO:0005515
Trre16g04746 926 SMART iq_5 789 811 IPR000048 GO:0005515
Trre16g04746 926 ProSiteProfiles Ankyrin repeat region circular profile. 603 631 - -
Trre16g04746 926 SMART CG_1_2 28 146 IPR005559 GO:0003677
Trre16g04746 926 Pfam IQ calmodulin-binding motif 792 811 IPR000048 GO:0005515
Trre16g04746 926 Gene3D - 764 814 - -
Trre16g04746 926 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Trre16g04746 926 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Trre16g04746 926 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Trre16g04746 926 ProSiteProfiles IQ motif profile. 768 796 IPR000048 GO:0005515
Trre16g04746 926 SUPERFAMILY Ankyrin repeat 545 665 IPR036770 -
Trre16g04746 926 Coils Coil 883 903 - -
Trre16g04746 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 817 IPR027417 -
Trre16g04746 926 Gene3D - 534 672 IPR036770 -
Trre16g04746 926 FunFam calmodulin-binding transcription activator 5 533 673 - -
Trre16g04746 926 Gene3D Immunoglobulins 362 458 IPR013783 -
Trre16g04746 926 SUPERFAMILY E set domains 368 455 IPR014756 -
Trre16g04746 926 Pfam IPT/TIG domain 369 454 IPR002909 -
Trre16g04746 926 ProSiteProfiles IQ motif profile. 871 899 IPR000048 GO:0005515
Trre16g04746 926 ProSiteProfiles IQ motif profile. 790 814 IPR000048 GO:0005515
Trre16g04746 926 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 897 - -
Trre16g04746 926 SMART ANK_2a 603 632 IPR002110 GO:0005515
Trre16g04746 926 SMART ANK_2a 642 673 IPR002110 GO:0005515
Trre16g04746 926 Pfam Ankyrin repeats (3 copies) 565 632 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04746 Trre-Chr16 51621011 51628743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04746 28 903 CAMTA Transcription Factor Family AT3G16940 55.114 0.0 945
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre16g04746 Ank_2 8.8e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04746 K21596 - gmx:100793970 1499.57