Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04738 ATGGGAAGAGCTCCTTGTTGTGAGAAGATTGGTTTGAAGAAAGGAAGATGGACTGCTGAAGAAGATAAGATCTTAACTGATTATATTCAAGAAAATGGTGAAGGATCATGGAGATCCTTGCCAAAGAATGCAGGTTTGTTGAGATGTGGAAAGAGTTGTAGACTGAGATGGATAAACTACTTGAGATCAGATGTGAAGAGAGGTAACATCACTCCTCAGGAGGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAACAGGTGGTCAGTAATAGCAGGACATTTACCAGGACGTACAGATAATGAAATAAAAAACTATTGGAACTCTCATTTAAGGAGAAAAATTTACTGCTTCATGAAGTCATTAAATGAATCACTTCCACCAATTGACATAGCTGCTGTTAACCTAGCTGCTTCTAACAGAAGAAGAGCTAATAGAGGACCACCAACAACCCAACAACATGCACCAAAGCAAAACCAAAACAACAACAACAAAGAGTTACTTCTTCAAGTTCAACTACCAACACTGCATAAAAGAATATCAAATGCTGCTCCTGGAGAACAAGAGCTACAACAAGGTTATAATACTGCAACTAATTCATCATGTCCAAATATGAATGAATTAGTTGACCCTTTGGAACCATTTGAATGGTTAGATGATGAAATTATTAAACTAAGTTACATGTTTGAAAGTGGAATACTTGTTAGTCCAGAACATGATAATAATGATAATAATAATAATAATATTAATGTAACTAGTGATGATAATACTCTAAATCCTAATTGTGGAGTATTAATGGGAAATAATGATGGTGGTGTTTGGAGTTCATCAAATGGTGCTGAAAGTGGAGAGTGGAATACTAATAATAATAATACTAGTTGTAATTCATCTGTGAATTCTGTTTATGAATATCAGTGGCCTGATATGCATTTAGAAGGTAGTAGTGTACAATCCTACAATCAACAATGGGACATTTGTGAACAACAAGGACAAGATGTTAATGGCTTCTGGGGTACTTCTAATTACCAAGATAATAGTTTTTATCACTGA 1053 0.3514 MGRAPCCEKIGLKKGRWTAEEDKILTDYIQENGEGSWRSLPKNAGLLRCGKSCRLRWINYLRSDVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMKSLNESLPPIDIAAVNLAASNRRRANRGPPTTQQHAPKQNQNNNNKELLLQVQLPTLHKRISNAAPGEQELQQGYNTATNSSCPNMNELVDPLEPFEWLDDEIIKLSYMFESGILVSPEHDNNDNNNNNINVTSDDNTLNPNCGVLMGNNDGGVWSSSNGAESGEWNTNNNNTSCNSSVNSVYEYQWPDMHLEGSSVQSYNQQWDICEQQGQDVNGFWGTSNYQDNSFYH 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04738 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre16g04738 350 MobiDBLite consensus disorder prediction 143 165 - -
Trre16g04738 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre16g04738 350 CDD SANT 16 61 IPR001005 -
Trre16g04738 350 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre16g04738 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre16g04738 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre16g04738 350 Gene3D - 71 116 - -
Trre16g04738 350 FunFam Myb transcription factor 71 116 - -
Trre16g04738 350 Gene3D - 13 66 - -
Trre16g04738 350 FunFam Myb transcription factor 11 67 - -
Trre16g04738 350 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 235 - -
Trre16g04738 350 SMART sant 66 114 IPR001005 -
Trre16g04738 350 SMART sant 13 63 IPR001005 -
Trre16g04738 350 CDD SANT 71 112 IPR001005 -
Trre16g04738 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre16g04738 350 MobiDBLite consensus disorder prediction 145 165 - -
Trre16g04738 350 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04738 Trre-Chr16 51573181 51575472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04738 1 226 MYB Transcription Factor Family AT5G49330 53.982 1.25e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre16g04738 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04738 K09422 - gmx:100805532 409.453