Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04737 ATGACGCTTCGACCAAATGACAAGCCAAATGACAAGCCTAATCCTCGCCGTAACCGCTACAAGGTCGCCGTCGATGCTGAAGATGGTCGCCGTAGACGAGAGGACGACATGATCGAGATTCGCAAGAACAAGCGCGAAGAGAGCTTGCAGAAGAAGCGTCGCGAAGGTGAACCATCTCAATTCCCCACTGTCGAAACTAAACAGATAGAGAATCTTTCTGCAATGATTGCTGGTGTCTCTTCCAACGATTCTGTTGCGCAACTGGAAGCCACCATCAAGTTTCGGACTATACTTTCAAAAGAAGGGAACCCGCCGATTGAAGAGGTTGTTCAATCTGGTGTTGTACCGCGTTTTGTTGAGTTTCTTGTTAGGGAGGACATGCCTCAACTTCAGTTTGAAGCTGCATGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAATACTAAGATTGTGATTGATCACGGTGCAGTACCTCTATTTGTTGCGTTGCTTAGTTCACCTATTAATGAAATTCGAGATCAGGCAGTGTGGGCTTTGGGAAATATTGCTGGTGACTCCCCTAAGTGCCGTGATCTAGTGCTTGGCCATGGTGCCCTTGTCTCACTATTGGCCCAACTGAAAGAGAACACCCCAATGTCAATGTTGAGAAATGCCACATGGACTTTATCAAACTTCTGCAGGGGAAAGCCACAGCCTGCATTTGAGCTGGTGAAACCTGTGCTTCCAGCACTACAGCATTTGATTTTGTCCGATGATCCAGAAATTTTGACAGATGCTTGTTGGGCTTTATCATACCTTTCTGATGGCACAGATGACAAAATTCAAGCAGTTATTGAGGCAGGTGTTTGCGGCCAACTGGTGCAACTCCTTCAACACCTATCTACTTCAGTATTGATCCCTGCTGTTCGTACAGTGGGAAATATTGTGACTGGAGATGATAGTCAGACTCAGTTGATGATCAATCATGGTGCACTCCCTTGCCTTTTGAGCTTATTGACATACAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACAGCTGGAACTAAGGAACAAATACAGGCTGTTATTGAAGCTGGTCTTATTGCTCCGCTTGTTAGTCTTCTTCAAAATGCAGAGTTTGAGATTAAAAAAGAAGCTGCATGGGCAATATCAAATGCCACATCCGGTGGAACTCATGAGCAGATCAAGTATTTGGTGGGTCAAGGTTGCATAAAACCACTATGTGATCTGCTTGATTGCCCCGATCCAAGAATTATCACTGTCTGTTTAGAGGGCCTAGAGAATATTCTGAATGTTGGAGAAGCGGAGAAGAGCTTGGGTAACTCTGGAGATTCCAACTTGTATGCTCAGATGATAGAGGATTCAGAGGGACTGGAGAAGATTGAAAACCTGCAGATTCACGACAACACTGACATATATGAGAGGGCTGTTAAACTTCTTGAAGCATTCTGGTTGGAAGATGAGATGATACTACCTCCAGGCAATGATGATCAATCTGGTTTCATGGCTTCAGTCCCATCTGGTGGATTCAACTTCAACTGA 1566 0.4444 MTLRPNDKPNDKPNPRRNRYKVAVDAEDGRRRREDDMIEIRKNKREESLQKKRREGEPSQFPTVETKQIENLSAMIAGVSSNDSVAQLEATIKFRTILSKEGNPPIEEVVQSGVVPRFVEFLVREDMPQLQFEAAWALTNIASGTSENTKIVIDHGAVPLFVALLSSPINEIRDQAVWALGNIAGDSPKCRDLVLGHGALVSLLAQLKENTPMSMLRNATWTLSNFCRGKPQPAFELVKPVLPALQHLILSDDPEILTDACWALSYLSDGTDDKIQAVIEAGVCGQLVQLLQHLSTSVLIPAVRTVGNIVTGDDSQTQLMINHGALPCLLSLLTYNHKKSIKKEACWTISNITAGTKEQIQAVIEAGLIAPLVSLLQNAEFEIKKEAAWAISNATSGGTHEQIKYLVGQGCIKPLCDLLDCPDPRIITVCLEGLENILNVGEAEKSLGNSGDSNLYAQMIEDSEGLEKIENLQIHDNTDIYERAVKLLEAFWLEDEMILPPGNDDQSGFMASVPSGGFNFN 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04737 521 ProSiteProfiles IBB domain profile. 1 62 IPR002652 GO:0006606|GO:0061608
Trre16g04737 521 MobiDBLite consensus disorder prediction 9 60 - -
Trre16g04737 521 SMART arm_5 356 396 IPR000225 GO:0005515
Trre16g04737 521 SMART arm_5 271 311 IPR000225 GO:0005515
Trre16g04737 521 SMART arm_5 230 269 IPR000225 GO:0005515
Trre16g04737 521 SMART arm_5 313 354 IPR000225 GO:0005515
Trre16g04737 521 SMART arm_5 145 185 IPR000225 GO:0005515
Trre16g04737 521 SMART arm_5 187 228 IPR000225 GO:0005515
Trre16g04737 521 SMART arm_5 102 143 IPR000225 GO:0005515
Trre16g04737 521 SMART arm_5 399 439 IPR000225 GO:0005515
Trre16g04737 521 PANTHER IMPORTIN ALPHA 14 496 - -
Trre16g04737 521 FunFam Importin subunit alpha 70 493 - -
Trre16g04737 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 113 156 IPR000225 GO:0005515
Trre16g04737 521 FunFam Importin subunit alpha 15 54 - -
Trre16g04737 521 Pfam Importin beta binding domain 16 91 IPR002652 GO:0006606|GO:0061608
Trre16g04737 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 324 367 IPR000225 GO:0005515
Trre16g04737 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
Trre16g04737 521 SUPERFAMILY ARM repeat 17 495 IPR016024 -
Trre16g04737 521 PIRSF Importin_alpha 6 520 IPR024931 GO:0005737|GO:0006606|GO:0061608
Trre16g04737 521 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 367 395 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 236 268 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 145 184 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 272 310 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 103 143 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 187 228 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 357 395 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 314 354 IPR000225 GO:0005515
Trre16g04737 521 Pfam Armadillo/beta-catenin-like repeat 400 437 IPR000225 GO:0005515
Trre16g04737 521 Gene3D - 70 493 IPR011989 -
Trre16g04737 521 Gene3D - 15 54 IPR036975 GO:0006606
Trre16g04737 521 MobiDBLite consensus disorder prediction 1 62 - -
Trre16g04737 521 Pfam Atypical Arm repeat 454 496 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04737 Trre-Chr16 51562825 51566239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04737 128 388 U-box Gene Family AT3G46510 23.755 1.47e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04737 K15042 - gmx:100780020 781.556