Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04736 ATGGTGGTTGATCAAAGTGGAAAGGGATCAGAAGGTGAAGATTCAAACCCTAACACTGTCGTTTCATCTGAAAACAGTCCAAAGAAAACATGTGCTGATTGTGGAACTTCCAAGACTCCTCTATGGCGTGGTGGACCTGCAGGACCAAAGTCTCTGTGTAATGCTTGCGGGATCAGGAGCAGGAAGAAGAAGAGAGCAATTTTGGGAATAAGCAAAGGAAACAACGAAGAAGGAACAAAAAAGGGGAAAAAGAGTAACGGTAGCGGTGGAAGCAAAGTTGGAGATAATTTGAACATGAAGCAGAGATTATATAATTTAGGGAAAGAAGTGTTTATGCAGAGATCGCATTGGAAGAAATTGGGAGAAGAAGAACAAGCTGCGGTGTTATTGATGTCTCTATCTTATGGATCTGCTGTTTATGCCTAA 426 0.4178 MVVDQSGKGSEGEDSNPNTVVSSENSPKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEEGTKKGKKSNGSGGSKVGDNLNMKQRLYNLGKEVFMQRSHWKKLGEEEQAAVLLMSLSYGSAVYA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04736 141 MobiDBLite consensus disorder prediction 1 47 - -
Trre16g04736 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 25 65 - -
Trre16g04736 141 CDD ZnF_GATA 30 84 IPR000679 GO:0006355|GO:0043565
Trre16g04736 141 ProSiteProfiles GATA-type zinc finger domain profile. 25 61 IPR000679 GO:0006355|GO:0043565
Trre16g04736 141 SMART GATA_3 25 84 IPR000679 GO:0006355|GO:0043565
Trre16g04736 141 MobiDBLite consensus disorder prediction 67 97 - -
Trre16g04736 141 ProSitePatterns GATA-type zinc finger domain. 31 56 IPR000679 GO:0006355|GO:0043565
Trre16g04736 141 PANTHER OS01G0976800 PROTEIN 13 137 - -
Trre16g04736 141 Gene3D - 26 90 IPR013088 GO:0006355|GO:0008270
Trre16g04736 141 Pfam GATA zinc finger 31 65 IPR000679 GO:0006355|GO:0043565
Trre16g04736 141 MobiDBLite consensus disorder prediction 9 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04736 Trre-Chr16 51555785 51556414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04736 18 141 C2C2-Gata Transcription Factor Family AT3G06740 60.465 8.98e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre16g04736 GATA 1.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04736 - - aprc:113847917 204.912