Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04734 ATGATATCGCGATTACCGAGTCACTGTATCTTCATCATCGTCGTTTTAGCAACAATCTTACTTTTAACGACGTCGTTTACCGATGCACAATCCTGCAACGGCATACTCATCTCCTACTCCTCCGGTACCGGAGTACGTCTTCCTCCGAACGTCACCGACCCAAAGAAACAACCATACCGATTCGAATCGACGTTGACTGTACTCAACAACGGTCTCGATGAGCTCAAGTCATGGAAAGTTTTCGTTGGATTTCAGCACAACGAGTTTTTAGTTTCCGCTTCCAATGCGGTGATCGCTGACGGTACCACTCTCCCCGCCGCCGTTGGAAACGGAACTGTTTTCGCTGGATTTCCAATGACTGATTTGAAGACTGCTGTTGAAACGGCTGGTGACTTGACTCAGATGCAGTCTCAGATCAAGCTCGTCGGTACTGTTTTTGGTGTGGCGCCGCCGGCTATTCCGTTGCCGTCTTCCATCAATCTCGCTAATGATGGATTCATTTGTGGGAAAACCACCGGTCAAGGGAAGAATGGGACTAATGTGTGTTGCACAAGAGATCCAAAGTTCAAAACAAACATCACTACAGATGAAAAGTTTCTACCGCGTCAAAATGGCGATCTTACTATTATGTATGATGTGATCAGATCATATGATTCAAATTACTGGGCAGAGGTTGCTATTACGAACCATAATTCTCTTGGAAGGCTTGATAATTGGAGGTTGAGTTGGGATTGGATGAATGATGAGTTTATATTTTCAATGAAAGGTGCTTATCCGGCTGTTGTGGATGCTTCTGATTGTATCTTTGGTAAGCAAGGTACATTTTACAAGGAACTTGATTTTGCTAATGTATTGAATTGTGAGAGGAGGCCTACCATTATTGATCTTCCTCCTACTAAGTTCAATGACACGGATATTGGGAAAATTCCATCTTGTTGCCGGAATGGTACTATATTGCCACCATCCATGGATCCAAGTAAATCTGTTTCGAGATTCCAAATGCAGGTGTTCAAAATGCCGCCGGTGCTTAACCGGTCCGAGCTTTCACCGCCGCAAAACTGGAAGATTAGTGGATCGCTTAACCCTGACTACAAATGCGGTCCTCCGGTTCGTGTTAGTCCTACCGCAAGTCCAGATTCTAGTGGGTTGCCCTTAAACAAAACTGTAATGGCAAGTTGGCAGGTTGTGTGTAACATAACAACAGCCAAGGGAACACCAAATAAATGTTGTGTCTCGTTTTCAGCTTATTACAATGAATCAGTTATTCCATGCAAAACATGTGCATGTGGATGCCCCACAAATGTGGCAAGAACATGTAGTACTACTGCACCTGCTATGTGGCTTCCCTCACAGGCACTCCTTGTTCCTTTCGAGAACCGAACTGCTCAGGCTGTTGCGTGGGCTAGTCTGAAACATTTACCAGTGCCACAACCAATGCCCTGTAGTGATAATTGTGGTGTGAGCATCAATTGGCATTTACTTACAGATTATAATAAAGGATGGAGTGCAAGGGTCACACTTTTCAATTGGGGTGAGACTAACTTTGCAGACTGGTTTGCTGCTGTGCAAATGGACAAAGCTGCTGCAGGTTTTGAGAAAATGTATTCATTCAATGCAAGTGCCATAGAGATAGACGGCGTGAATAATACGATAATAATGCAAGGTTTGGAGGGATTGAACTACCTTGTTGGAGAAACAGATGGAGCTGACCCTCGGAGAGATCCTAGAGTGCCTGGAAAACAACAGTCAGTAATCTCATTCACAAAGAAAACTACTCCTGGAATCAGTATTGTTCGTGGTGATGGGTTCCCCACTAAAGTTTTCTTCAATGGGGAAGAGTGCTCTCTTCCATCTGTACTTCCAACCAGTAGTGCTTCCAGGAAGAGATTTTCCTATGCTACTTTGATGCTTCTACCATTGTTGCTATTCATCTTCATGTTGTAA 1944 0.4408 MISRLPSHCIFIIVVLATILLLTTSFTDAQSCNGILISYSSGTGVRLPPNVTDPKKQPYRFESTLTVLNNGLDELKSWKVFVGFQHNEFLVSASNAVIADGTTLPAAVGNGTVFAGFPMTDLKTAVETAGDLTQMQSQIKLVGTVFGVAPPAIPLPSSINLANDGFICGKTTGQGKNGTNVCCTRDPKFKTNITTDEKFLPRQNGDLTIMYDVIRSYDSNYWAEVAITNHNSLGRLDNWRLSWDWMNDEFIFSMKGAYPAVVDASDCIFGKQGTFYKELDFANVLNCERRPTIIDLPPTKFNDTDIGKIPSCCRNGTILPPSMDPSKSVSRFQMQVFKMPPVLNRSELSPPQNWKISGSLNPDYKCGPPVRVSPTASPDSSGLPLNKTVMASWQVVCNITTAKGTPNKCCVSFSAYYNESVIPCKTCACGCPTNVARTCSTTAPAMWLPSQALLVPFENRTAQAVAWASLKHLPVPQPMPCSDNCGVSINWHLLTDYNKGWSARVTLFNWGETNFADWFAAVQMDKAAAGFEKMYSFNASAIEIDGVNNTIIMQGLEGLNYLVGETDGADPRRDPRVPGKQQSVISFTKKTTPGISIVRGDGFPTKVFFNGEECSLPSVLPTSSASRKRFSYATLMLLPLLLFIFML 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04734 647 PANTHER COBRA-LIKE PROTEIN 7 27 646 - -
Trre16g04734 647 SUPERFAMILY Carbohydrate-binding domain 203 253 IPR008965 GO:0030246
Trre16g04734 647 Pfam COBRA-like protein 221 400 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04734 Trre-Chr16 51535924 51538224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04734 32 629 COBRA Gene Family AT4G16120 66.945 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04734 - - gmx:100814396 1115.52