Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04733 ATGAATCTTAGCAACGGTAAAGGATCCATTTCTACTGTTACTTCAACTGCTACTATGAAATCCGGTGAAGGTTCCGACCAGTTTCCGGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCCACGTGCCTTATGATCCTTGAGAAGATGTTACGCACGTGTCTTTATGAAGTTACGAAATGCAATCGAGCTGAGACGGCACTTTCTCTCCTAAGAGAGAACAAGAATGGATTTGACATTGTTATCAGTGATGTCCATATGCCTGACATGGATGGATTTAAACTCTTAGAACACATTGGATTGGAAATGGACCTTCCAGTTATTATGATGTCTGCGGATGATGGTAAAAATGTTGTGATGAAGGGTGTAACACACGGTGCTTGCGATTATCTAATTAAACCTGTTCGTATCGAGGCTTTGAAGAACATATGGCAACATGTGGTTAGGAAGAAAAAGAATGAGTGGAAAGATACAGAGCAATCGGGTAGCGCTGATGAAGGAGATCGACATCCAAAGGCATCCGATGATGCTGATTATTCGTCTTCTGCTAATGAAGGTAATTGGAGAAACTCGAGAAAGAGAAGGGACGATGAAGAGGATGGTGAGGATAGAGATGACTCGTCAACACTAAAGAAGCCTCGTGTTGTTTGGTCTGTCGAGCTCCATCAACAGTTTGTGGCTGCTGTCGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGCCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATATCGGTTGTATCTTCGAAGGCTGAGTGGAGTTTCTCAGCACAATAACTTGAACAACTCATTTCTCAGCCCACAAGAGGCATCATTTGGTACGATTTCACCAATGAACGGTCTTGATCTTCAAACTCTTGCAGCTGCTGGCCAGCTCCCAGCACAAAGTTTAGCCACTCTTCAAGCCGCAGGACTTGGTAGGTCAACTGTGAAACCAGGCTTATCAATGCCTCTCATGGATCAAAGAAACCTTTTCAGTTTTGAAAACCCGAGATTGAGATTTGGAGAAGGGCAACAACAACTTTTGAGCAGCAGTAAACCAACAAATCTTCTTCATGGAGTTCCTACCAACATGGAGCCAAAGCAGCTCGCAAATTTGCACCAATCTGCACAATCCCTCGGCAATTTGAATATGCGAGCCACTGGTTCTGCTACGCAGGGTAATCCCTTATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGTTAAGTGAAAATGCCAGTCCTCGTGTTCCGAGACTTCCGAACATCTTGTCAAACGGAATTTCTGATGGTCTTTTAGGGAGAAATGGCATAGCTAGTAGCAGCAGAGGTCCTTCATTTAATCCTGTTTCACAGAACTCTTCATATTTGAATTTTCCCATGAATCAAAGCACCGAATTGTCTGTTAGTAATTTCCCTCTCGGAAGCACCCCAGGTATATCTAGTATGACAACCAAAGGCTCGTTTCAACCGGATGTTAATTCGGGAATCAGAGCATCTGCTGGTTTTCCAAACTACGATATTTTTAATGACCTGAACCATCAGAAGTCCCGAGATTGGGGGATGGCAAGCCAAGGTCCAATGTATGATTCATCATCACATGCAAATCCTTTGCATGGTAACATTGATGTCTCTCCATCAGTTTTAGTCCAGCAGGGTTATTCTTCTACTCAACAACCTGGACATAGCAGAGATGCCTCTTTGATGGGAAAATCTCCTTTCTCTCTCGGCGAAGGCTTGGAACACATTAATCTCCAAAATGGCAGTCAACACTTCAATCCCCTTCTTGCTGGAAATTCAACAAGGGTCAAGTCTGAAAGTGTTCCCGACGCGAGCTCCCAGACTAACCTCTTCCCTGATCATTACGGGCAGGATGATCTCATGAGTGCACTTCTGAAACAGCAAGAAGTCATTGGACAAGGCGAGAACGAGTTTGACTTTGATGGATATTCTCTGGACAACATTCCTGTCTAG 2016 0.4395 MNLSNGKGSISTVTSTATMKSGEGSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDTEQSGSADEGDRHPKASDDADYSSSANEGNWRNSRKRRDDEEDGEDRDDSSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHNNLNNSFLSPQEASFGTISPMNGLDLQTLAAAGQLPAQSLATLQAAGLGRSTVKPGLSMPLMDQRNLFSFENPRLRFGEGQQQLLSSSKPTNLLHGVPTNMEPKQLANLHQSAQSLGNLNMRATGSATQGNPLLMQMAQSQPRGQMLSENASPRVPRLPNILSNGISDGLLGRNGIASSSRGPSFNPVSQNSSYLNFPMNQSTELSVSNFPLGSTPGISSMTTKGSFQPDVNSGIRASAGFPNYDIFNDLNHQKSRDWGMASQGPMYDSSSHANPLHGNIDVSPSVLVQQGYSSTQQPGHSRDASLMGKSPFSLGEGLEHINLQNGSQHFNPLLAGNSTRVKSESVPDASSQTNLFPDHYGQDDLMSALLKQQEVIGQGENEFDFDGYSLDNIPV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04733 671 Pfam Response regulator receiver domain 34 142 IPR001789 GO:0000160
Trre16g04733 671 ProSiteProfiles Response regulatory domain profile. 33 148 IPR001789 GO:0000160
Trre16g04733 671 SMART REC_2 32 144 IPR001789 GO:0000160
Trre16g04733 671 PIRSF RR_ARR_type-B 14 663 IPR017053 GO:0003677|GO:0003700|GO:0009736
Trre16g04733 671 Pfam Myb-like DNA-binding domain 214 264 IPR001005 -
Trre16g04733 671 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 265 IPR006447 GO:0003677
Trre16g04733 671 Gene3D - 209 271 - -
Trre16g04733 671 MobiDBLite consensus disorder prediction 152 210 - -
Trre16g04733 671 CDD REC_typeB_ARR-like 34 148 - -
Trre16g04733 671 MobiDBLite consensus disorder prediction 567 587 - -
Trre16g04733 671 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 268 IPR017930 -
Trre16g04733 671 MobiDBLite consensus disorder prediction 188 210 - -
Trre16g04733 671 MobiDBLite consensus disorder prediction 1 23 - -
Trre16g04733 671 Gene3D - 32 203 - -
Trre16g04733 671 FunFam Two-component response regulator 208 271 - -
Trre16g04733 671 SUPERFAMILY CheY-like 31 153 IPR011006 -
Trre16g04733 671 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 381 IPR045279 GO:0009736
Trre16g04733 671 MobiDBLite consensus disorder prediction 152 176 - -
Trre16g04733 671 FunFam Two-component response regulator 32 169 - -
Trre16g04733 671 SUPERFAMILY Homeodomain-like 209 269 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04733 Trre-Chr16 51529364 51532845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04733 67 671 Response Regulator Gene Family AT3G16857 51.080 3.90e-178 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre16g04733 Response_reg 5.5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04733 - K14491 gmx:100814930 1092.8