Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04711 ATGGTTCATTTCCCATCTTTTGTAAACGGATTGGCAAGAACAATATCAATCAAGAAAGAGAAGAATTTTCAAAAGGATGATGCAAGAAAAGCTGTAGAAGAATTGGCAAAAGAAGCAAGAAAGAATGAATTGTTTTTGAGTTCCTCTGGAGTTGTTAGGTCCAACAAGGACAACAGTTTTGTTTCTGTTTTTACACATAGAGGCCACAAAGGAGTCAACCAAGATCGTCTCGTTGTTTGGGAGGAATTTGGTTGCCAACAAGACATGATGTTTTGTGGAGTTTTTGATGGGCATGGTCCTTGGGGACATTTTGTAGCTAAAAGGGTAAGGAAATTAGTACCAGCCCTTTTGCTATCCAATTGGCAAGAAAATCTTGCAGCAAAATCAATTGACCTAAATTTTAAGATGGAAGAAGACAAAAATGTTCTTGGATTGGACCTATGGAAACAGTCCTACATAAAGGCTTTCGCTGCTGTTGACCAAGATTTGAAGCAGCACACCGGAATTGATTCATTTAATAGTGGCACTACAGCTTTGACACTTATCAAACAGGGTGAAAACCTTATTATAGCAAATGTGGGTGATTCAAGACTTGTGTTGGCAACAACTTCAGAAGATGGCACATTATTTCCACTTCAACTTACCACTGACTTCAAACCAAATTTACCAAAGGAAGCAGAACGTATAAAAGAATCAAAAGGACGTGTATTTTGTATGAAAGATGAACCAGGAGTATACAGAGTTTGGATGCCAAACTGTAAAACTCCAGGATTAGCAATATCTAGAGCATTTGGTGATTATTGTATGAAAGACTATGGTTTAATCTCTGTGCCAGATGTGACATATAGAAAACTTACCACTAGAGATCAATTTATCATCTTAGCTTCTGATGGGGTGTGGGATGTTGTATCAAACCAAGAGGCAGTGAAGATAGTTTTTACAGCACCAAATAAAGAAAAAGCAGGTGAAAGGCTTGTGAAGTATGCTATGCGTGAATGGAAAAGAAAGAGAAGTGGTATTGCTATGGATGATATGTCAGTAATTTGCCTCTTTTTTAATCAAATCCAAGCAACTAAAGTTGTTGATTAA 1089 0.3728 MVHFPSFVNGLARTISIKKEKNFQKDDARKAVEELAKEARKNELFLSSSGVVRSNKDNSFVSVFTHRGHKGVNQDRLVVWEEFGCQQDMMFCGVFDGHGPWGHFVAKRVRKLVPALLLSNWQENLAAKSIDLNFKMEEDKNVLGLDLWKQSYIKAFAAVDQDLKQHTGIDSFNSGTTALTLIKQGENLIIANVGDSRLVLATTSEDGTLFPLQLTTDFKPNLPKEAERIKESKGRVFCMKDEPGVYRVWMPNCKTPGLAISRAFGDYCMKDYGLISVPDVTYRKLTTRDQFIILASDGVWDVVSNQEAVKIVFTAPNKEKAGERLVKYAMREWKRKRSGIAMDDMSVICLFFNQIQATKVVD 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04711 362 SMART PP2C_4 51 350 IPR001932 -
Trre16g04711 362 SUPERFAMILY PP2C-like 53 354 IPR036457 -
Trre16g04711 362 ProSiteProfiles PPM-type phosphatase domain profile. 60 352 IPR001932 -
Trre16g04711 362 PANTHER PROTEIN PHOSPHATASE 47 350 IPR015655 GO:0004722|GO:0006470
Trre16g04711 362 CDD PP2Cc 60 352 IPR001932 -
Trre16g04711 362 Gene3D - 46 355 IPR036457 -
Trre16g04711 362 FunFam Probable protein phosphatase 2C 34 51 354 - -
Trre16g04711 362 Pfam Protein phosphatase 2C 84 331 IPR001932 -
Trre16g04711 362 Coils Coil 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04711 Trre-Chr16 51362662 51364741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04711 1 353 PP2C-type Phosphatase Gene Family AT3G05640 58.592 1.95e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04711 - - gmx:100814087 597.045