Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04709 ATGAATTCCAATTACGGAAAACCCAACCCTCAAAAATCATCCTCTGTTTCTCTCAACAACTTCAATTTCGATCTTGATCTTGGAATCGGATCCAATCGATCCAAATCCCTAAAAGATCAGAAAAACCCCAATCCTTCCTATTCCAATTCCTATTCAACTCCTTCATATTCATCTGCGCAACCCAAAAAAACCACATGGACCCATCAACCCACTCAAACTCCGGCTGGATTACCCGGTGCACCGCCGTCGATGGTTGGTGACATCTTCGGAAAAAGTTGGGGATCTACTCAATCGTCTGGTCCCAGCATTGGAATTGTTAATAAAAACCCTAATTTATTTGGGGATTTGGTAACCTCTGCTTTGGGACAAGGTTCTTCTTCTTCAAATGTTCCTCTGAAAAATGCTACTCCAAAACCTAATAAATCCTCTTTTTCAATGTCAAATATGGCTGATTCTTTGCCTAAACCAGTTAATACACCACAGAGTGGTTCTACTTGGGGATCATCTTCAGGGAATTTTAATTTGAATGCTAATAAAACTCCCAATCTTGGTGGTCCTTCGATTCGAAGTGGCGTTGGTGTTGCTGCATCTGGTAGTGGAATTAGTTCTAGTAACAAAGATCCTTTTAGTTCATTGGCTGGTTTTGGATCTAATGGATCTAAGCAACAATCTAGTCTTAATTCAGCTGCTAAACCTCAAAAAATTGATTTAGAAGATGATGGTTTTGGAGATTTTCAAAATGCTTCGAAACCGAGCTCTAATGCATTTCCATCAAGTGGTGGTGGTAGTTCTGGAATTGATTTTGATTTTACTGGATCGTCTACTTCAAATAAGACACCGGTTCAAGCTTCTTCGGGTGGTGGTGATCCAATGGATATGTTTTTCACATCTTCAACTGCCTCAACTGGAGGTGGTAGTGCTGCGCCTGCAGCGGCGGCGTCTTCTGAAATTGATGATTGGGGTACTGAGTTTGGAGGTGGAAACCATGATGTGGGTGGAACAACTACCGAGCTTGATGGGCTTCCACCTCCTCCTGCTGGGATATCAGGTTCTGCTGCTAAAAGCAAAGGGATGGAAAATTACAAACAGGGGCAATTTGCTGATGCTATTAAGTGGCTTTCATGGGCTCTCATCCTTTTAGAGAAAGCTGGTGATGGTGCTGGCACGACGGAGGTTTTGTCATGCAGAGCTTCTTGTTACAAAGAAGTTGGAGAGTATAAAAAAGCGGTGGCGGATTGTACTAAGGTTATTGGAAACGATGGAAAAAATGTATCTGTCCTTGTTCAGCGTGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGTGCTGAAGACCTGAGAACTGTGCTGAAGATTGATCCTACTAATAGGGTTGCTAGAGGTACTGTTCACCGGTTGGCTAAGATGGCTGAATAG 1419 0.4257 MNSNYGKPNPQKSSSVSLNNFNFDLDLGIGSNRSKSLKDQKNPNPSYSNSYSTPSYSSAQPKKTTWTHQPTQTPAGLPGAPPSMVGDIFGKSWGSTQSSGPSIGIVNKNPNLFGDLVTSALGQGSSSSNVPLKNATPKPNKSSFSMSNMADSLPKPVNTPQSGSTWGSSSGNFNLNANKTPNLGGPSIRSGVGVAASGSGISSSNKDPFSSLAGFGSNGSKQQSSLNSAAKPQKIDLEDDGFGDFQNASKPSSNAFPSSGGGSSGIDFDFTGSSTSNKTPVQASSGGGDPMDMFFTSSTASTGGGSAAPAAAASSEIDDWGTEFGGGNHDVGGTTTELDGLPPPPAGISGSAAKSKGMENYKQGQFADAIKWLSWALILLEKAGDGAGTTEVLSCRASCYKEVGEYKKAVADCTKVIGNDGKNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPTNRVARGTVHRLAKMAE 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04709 472 SUPERFAMILY TPR-like 352 461 IPR011990 GO:0005515
Trre16g04709 472 SMART tpr_5 350 383 IPR019734 GO:0005515
Trre16g04709 472 SMART tpr_5 424 457 IPR019734 GO:0005515
Trre16g04709 472 SMART tpr_5 390 423 IPR019734 GO:0005515
Trre16g04709 472 MobiDBLite consensus disorder prediction 236 300 - -
Trre16g04709 472 MobiDBLite consensus disorder prediction 212 231 - -
Trre16g04709 472 Gene3D Tetratricopeptide repeat domain 350 471 IPR011990 GO:0005515
Trre16g04709 472 MobiDBLite consensus disorder prediction 29 74 - -
Trre16g04709 472 MobiDBLite consensus disorder prediction 246 284 - -
Trre16g04709 472 ProSiteProfiles TPR repeat profile. 424 457 IPR019734 GO:0005515
Trre16g04709 472 MobiDBLite consensus disorder prediction 29 83 - -
Trre16g04709 472 MobiDBLite consensus disorder prediction 124 185 - -
Trre16g04709 472 PANTHER OS03G0340700 PROTEIN 1 472 - -
Trre16g04709 472 Pfam Tetratricopeptide repeat 425 457 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04709 Trre-Chr16 51350030 51352877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04709 365 472 Calmodulin-binding Proteins AT3G25230 30.357 1.25e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04709 - - pvu:PHAVU_003G107800g 590.112