Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04707 ATGGCAAATAGACTTTTGTTTACCGACCATGGTGAAATTGGATTGTTTTGTAACCTTACGAATGCCTATTGTTTGGTTGGCACTGGAGGTTCCGAAAACTTCTACAGTTCAATTGAGGCTGAATTAGAAGATACTATCCCTATCATCAAAACCTCCATTGGTGGCACCCCTGGTGTTGGTCGTTTTTGTATTGCAAACAAAAAAGGGCTTCTCTTGCCCCATACAACCACATACGAAGAATTGCTACATATAAGAAGAAATCTGCCTGATGGAGTTTTTACTGCTATCGTTAATGAAGGGATGACTTATTATGGAATGTTTATAGCTTGTAATGACCATGTGGCCCTCGCTCACGCTGATCTTTGCCCGGAATTTAAGGAGTTGATCACAGATGTCCTTGGGGTAGAAGTTTTCATGCCGGAAGATTCTTATAGTTTTTCTTCTGGAACTTACTGTGCTTTGTCCAACAGAGGTGGTTTGATCCACCCTGGTGCTTCCGAAAAAGTCTTGGATGAACTTTCTGCAGCTCTTGAAGTTCCTCTGGAACGTGGGACTGTCAATCGAGGCAGCATTGTTCTAGCTTCTGGCATGACAGTAAATGATTGGACAGGCTTTTGTGGTTCAAGCACCACAAGAGCAGAGCTCCGCGTGATTGATAGTGTTTTCAAGCTGAGGGATACCTAA 684 0.4298 MANRLLFTDHGEIGLFCNLTNAYCLVGTGGSENFYSSIEAELEDTIPIIKTSIGGTPGVGRFCIANKKGLLLPHTTTYEELLHIRRNLPDGVFTAIVNEGMTYYGMFIACNDHVALAHADLCPEFKELITDVLGVEVFMPEDSYSFSSGTYCALSNRGGLIHPGASEKVLDELSAALEVPLERGTVNRGSIVLASGMTVNDWTGFCGSSTTRAELRVIDSVFKLRDT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04707 227 Pfam eIF-6 family 6 203 IPR002769 GO:0042256|GO:0043022
Trre16g04707 227 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Trre16g04707 227 SUPERFAMILY Pentein 1 224 - -
Trre16g04707 227 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 226 IPR002769 GO:0042256|GO:0043022
Trre16g04707 227 Hamap Translation initiation factor 6 [eif6]. 1 227 IPR002769 GO:0042256|GO:0043022
Trre16g04707 227 Gene3D - 1 225 - -
Trre16g04707 227 NCBIfam translation initiation factor IF-6 6 224 IPR002769 GO:0042256|GO:0043022
Trre16g04707 227 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04707 Trre-Chr16 51329301 51332295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04707 1 226 Eukaryotic Initiation Factors Gene Family AT3G55620 60.619 4.59e-97 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04707 K03264 - ming:122066887 281.182