Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04703 ATGGATTCGAGCGAAAGTGAAACCGAAAACAACTATGCTGCTAGTGGCAAAATAATGCTAACAGCCACTATCATTCTCTTCATCATTATCATCATAATACTCTGTCTTCATCTCTTAATTCGATGGTACCTTCTTCGTTCCGTCAACCGTCAACAACACCGCCGTAACCGTAACCGTCATGTTCAACGTCAACCGTTTGTTTTCTACGTTGATCCTTCCGCCCCTGCTTCATTGATCCCCGCCGTCTCTCGCGGACTCGATGCCTCTGTTATTTCGTCACTCCCTGTGTTTAAATTTTGTCCTGAGACTCATCCGGAGGGAGTGGAATGTGCGGTTTGTTTGTCGGAGTTTGAAGAAGGGGAAACGGGTCGGGTTTTACCCAAATGTAATCATAGTTTTCATATTGATTGTATTGATATGTGGTTTCAGTCTCATTCTACTTGTCCGCTTTGTAGAGCACCCGTGGAGCCTCCTCCGGTTCAATTGACCCGATCCGAAGTGGTGATTGATGTGTGTGAACCGGAATTGGTTTTGGATTCGAGTTCTGAGGAAGAAATAAACCGGTCTGAACCCGAATTTTCTTCTTCAGCAAGTTCGAAGCAATCTTCTTGTGTTGGCGTGACAGTTGAGATTCCGGGAAGGAGCGAATGCGACTGTGATTGCGAGAGGTTCGTCGCCGGCGAGTCGAGTTGTGATTCATCGTCGTCGTTTCGGTCGCCGATGAGTCGCGTGTTGTCGTTTACCAGAATTCTCAGTAGAGAGAGGAAACCGAGTGTTTCTGCTTCGTCGGATTGTGTCTCTGTGACAGAGTTGGATGCAGAGCGAGGTGGAAGGGAGGTGACTCAGTGA 849 0.4747 MDSSESETENNYAASGKIMLTATIILFIIIIIILCLHLLIRWYLLRSVNRQQHRRNRNRHVQRQPFVFYVDPSAPASLIPAVSRGLDASVISSLPVFKFCPETHPEGVECAVCLSEFEEGETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEPPPVQLTRSEVVIDVCEPELVLDSSSEEEINRSEPEFSSSASSKQSSCVGVTVEIPGRSECDCDCERFVAGESSCDSSSSFRSPMSRVLSFTRILSRERKPSVSASSDCVSVTELDAERGGREVTQ 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04703 282 FunFam RING-H2 finger protein ATL3 78 157 - -
Trre16g04703 282 Pfam Ring finger domain 109 152 IPR001841 -
Trre16g04703 282 SUPERFAMILY RING/U-box 90 158 - -
Trre16g04703 282 CDD RING-H2_EL5-like 109 152 - -
Trre16g04703 282 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Trre16g04703 282 SMART ring_2 110 151 IPR001841 -
Trre16g04703 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 158 IPR013083 -
Trre16g04703 282 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 156 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04703 Trre-Chr16 51309216 51310064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04703 10 279 Rapid Response to Elicitors AT3G16720 48.264 3.09e-66 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04703 - - pcin:129320593 226.098