Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04684 ATGGGCGGCCAGATGCATCAGAGCAATGCTGCCGCGGCTGCTCTGTATGACAATGCCGGCGCCGCTGTACACAGTGCAGCGCCAGGGACTGCTACCGATGCCGGCGATGCTGTTATGGCTCGTTGGTTGCAATCCGCCGGCTTACAGCATCTGGCCTCTCCATTGGCTTCCACTGTAATTGATCAACGGCTTCTCCCCAACCTTCTCATGCAGGGTTATGGAGCACAGTCTGCGGAAGAAAAACAGAGGCTTTTTAAGTTAATGAGAAGTCTCAATTTTAATGGGGAATCTGGTTCAGAACCATACACGCCCACTTCCCAAACTTTAGGTGGAGCGGCTGTATCAGATGGGTTTTATTCTCCAGACTTTAGGGGGGATTTCGGAGCTGGTCTCTTGGATCTTCATGCTATGGATGATACAGAGCTTTTGTCTGAGCAAGTTATCTCAGAACCCTTTGAGCCATCACCCTTTATTCCCGGAGGTACCAGAGAATTTGAAGACGACTTCAACTCAGTCAGCTTCAAGCAGGGAGGAGGAGAAACAATTGCTGATGCATCACATTTTTTACCTGTCAATGAAAAAGAGAATAATACAAGAGAAAATAATGTTGCTAAGATAAAAGTTGTGGTACGCAAAAGACCTTTAAATAAAAAGGAGCTTGCTAAGAAGGAGGATGATATTGTAACTGTATGTGACAATGCATATTTGACCGTTCATGAACCTAAAGTGAAGGTTGATTTGACAGCTTATGTGGAGAAGCATGAGTTTTGTTTTGATGCTGTTATTGATGAGAATGTTACCAATGATGAAGTATATCGAGTTACGGTAGAACCTATTATTCCTACAATTTTTGAGAGGACCAAAGCTACCTGTTTTGCTTATGGTCAGACAGGAAGTGGCAAAACATTCACAATGCAACCATTACCACTCAGAGCTGCAAATGACCTTGTTAGACAGTTGCACCGGCCTGTTTACCGAAATCAGAAATTTAAATTGTGGCTTAGCTACTTTGAGATATACGGTGGAAAACTGTTTGATCTTCTTGGCGACAGGAAGAAACTCTTAATGAGAGAAGATGGACGACAGCAAGTTTGTATTGTAGGATTGCAAGAATTTGAAGTTTCTGATGTACAGATTGTCAAAGAATTCATTGAAAAGGGGAATGCAGCAAGAAGTACAGGATCCACTGGTGCGAATGAGGAGTCCTCCAGGTCACATGCTATCTTACAATTGGTTGTAAAGAGGCACAACGAGGTAATAAAAGAAAGCAGGCGGAATAATGATGGAAATGAGACAAAAAGTGGGAAGGTTGTGGGGAAGATTTCTTTCATTGATCTTGCTGGAAGTGAAAGAGGCGCTGACACTACTGACAATGACCGTCAGACAAGGATTGAAGGAGCTGAAATCAACAAGAGTCTTTTGGCTTTGAAGGAGTGTATTCGAGCTTTGGACAATGATCAGATCCATATTCCTTTTCGCGGAAGTAAACTTACAGAAGTGCTTCGTGACTCTTTTGTTGGCAATTCAAAGACAGTCATGATCTCTTGTATATCTCCAAATGCGGGATCCTGTGAACACACACTTAATACCTTAAGATATGCTGATCGAGTTAAGAGTCTGTCCAAAAGTGGCAATCCTAGAAAGGACCAGGCCCCAAATCCAGTATCACAGTCAGATAAAGAGGTTTTATCCACATCATCCCTTCCAGATAGTACTTGTGCCGAGGATTTTTATGATCAACGTCAAGAGGTGAAAACAGTGGATATGGGCAGGAAAGTTATTGAGAAGGAAAAATTGTTGTACAGCTCTGGTGCTGATATTGACAAGCAACCATCGAGTTTTTCTTCTTCCAGTTTTTTATTCAACGGACGAGAGGAGAAAGGTTTGCCTTCTGTCTCAATGGACAGGAACAGGTTTGAAGTGAAAAATTCGACTAGTCAAAAGATTAACCCTTATTCTCAAAATGATACGGACGAGAAAGTGCAAAAGGTGTCTCCTCCGCGCAGAAAAGGGGCCAAGGAGGAGAGATCTGAAAGGTCTTTGAACTGGCAAAAAAGGGATGCCAATGGTTATGATCATTTCACCACTAGCTCCAAGCAACAGAGCACAGGGAATTCTAACACAGTTGCCACTGGATCCAGGCAGCCTGAAGCAGAATCCTCACCTGATGTGAATATCAGCGCCGTTCTTGAGGAGGAGGAAGCATTAATTGCTGCTCATAGGAAAGAAATTGAGGACACAATGGAGATTGTCCGAGAAGAAATGAAGCTATTAGCAGAAGTGGACCAGCCAGGAAGTCTTATTGACAACTATGTAACCCAGTTGAGTTTTGTGCTTTCTCGCAAAGCAGCTAGTCTTGCAAGTCTCCAGGCTCGCCTTACAAGATTCCAACATCGACTAAAAGAACAAGAGATACTAAGCAGAAAAAGAGTACCCCGTTAA 2442 0.4316 MGGQMHQSNAAAAALYDNAGAAVHSAAPGTATDAGDAVMARWLQSAGLQHLASPLASTVIDQRLLPNLLMQGYGAQSAEEKQRLFKLMRSLNFNGESGSEPYTPTSQTLGGAAVSDGFYSPDFRGDFGAGLLDLHAMDDTELLSEQVISEPFEPSPFIPGGTREFEDDFNSVSFKQGGGETIADASHFLPVNEKENNTRENNVAKIKVVVRKRPLNKKELAKKEDDIVTVCDNAYLTVHEPKVKVDLTAYVEKHEFCFDAVIDENVTNDEVYRVTVEPIIPTIFERTKATCFAYGQTGSGKTFTMQPLPLRAANDLVRQLHRPVYRNQKFKLWLSYFEIYGGKLFDLLGDRKKLLMREDGRQQVCIVGLQEFEVSDVQIVKEFIEKGNAARSTGSTGANEESSRSHAILQLVVKRHNEVIKESRRNNDGNETKSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNPRKDQAPNPVSQSDKEVLSTSSLPDSTCAEDFYDQRQEVKTVDMGRKVIEKEKLLYSSGADIDKQPSSFSSSSFLFNGREEKGLPSVSMDRNRFEVKNSTSQKINPYSQNDTDEKVQKVSPPRRKGAKEERSERSLNWQKRDANGYDHFTTSSKQQSTGNSNTVATGSRQPEAESSPDVNISAVLEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSLIDNYVTQLSFVLSRKAASLASLQARLTRFQHRLKEQEILSRKRVPR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04684 813 MobiDBLite consensus disorder prediction 627 724 - -
Trre16g04684 813 CDD KISc_KIF2_like 205 538 - -
Trre16g04684 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 540 IPR027417 -
Trre16g04684 813 Gene3D Kinesin motor domain 182 543 IPR036961 -
Trre16g04684 813 MobiDBLite consensus disorder prediction 689 722 - -
Trre16g04684 813 FunFam Kinesin-like protein 185 543 - -
Trre16g04684 813 Coils Coil 730 761 - -
Trre16g04684 813 MobiDBLite consensus disorder prediction 661 686 - -
Trre16g04684 813 MobiDBLite consensus disorder prediction 544 568 - -
Trre16g04684 813 MobiDBLite consensus disorder prediction 637 660 - -
Trre16g04684 813 ProSiteProfiles Kinesin motor domain profile. 205 540 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g04684 813 PRINTS Kinesin heavy chain signature 440 458 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g04684 813 PRINTS Kinesin heavy chain signature 396 413 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g04684 813 PRINTS Kinesin heavy chain signature 286 307 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g04684 813 PRINTS Kinesin heavy chain signature 490 511 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g04684 813 Pfam Kinesin motor domain 211 539 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre16g04684 813 MobiDBLite consensus disorder prediction 540 568 - -
Trre16g04684 813 ProSitePatterns Kinesin motor domain signature. 439 450 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre16g04684 813 PANTHER KINESIN-RELATED PROTEIN 6 32 811 IPR027640 GO:0003777|GO:0007018
Trre16g04684 813 Coils Coil 786 806 - -
Trre16g04684 813 SMART kinesin_4 203 546 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04684 Trre-Chr16 51191385 51197586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04684 197 540 Calmodulin-binding Proteins AT5G65930 34.463 2.57e-43 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04684 K10393 - gmx:100778915 1344.33