Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04680 ATGGAGAACCCTCAATATCCAAACAACAACAACAATCCTCCTCCTTCACCCTATCAACACCAACGCACCGCTTCAATTCCCAAACCACAATCTCACCATTCCGATAATAATGATCCAACCACCGCTGAGTTACGTGCTCTCGATTGTAACCTCGCTTCTCTCTGTGAACATGTTCAAATTGAAGGTTTCAGTTCTGGCTCTTTTTCCGATATCGTTGTTAATGCAATGGGTTCCACTTATCATCTTCATCGTCTCATCCTCTCCCGCAGTTCATATTTCAGGAACATGCTTCATGGTCCATGGAAAGAAGCCAGTGCTGCTATTGTGACCCTGCAAATTGATGATAACAATGTTAATGACGAAGCTATTGCAATCGCTTTGGCATATCTATATGGAAACCACCCGAAACTTAATGATAATAATGCATTTCGTGTTCTTGCTGCCGCTTCCTTTCTCGACCTTCAGGATTTATGTGCTATATGTACAGATTTCATAATATCTGAGCTATGGACTTCAAACTTCTTGGCTTATCAGGTGTTTGCGGAGAACCAAGATTATGGCATTCATGGGGAGCGTGTTAGAACTGCTTGTTGGGGCTACCTTTGTCAAAGTGGGGGCATGGAATTGAGAGAGGTGCTTCCTAAACTTTCATCTCATACATTACATGCATTACTGACCTCTAATGATCTGTGGATATCCTGTGAAGAGAAGCGGTTTGAATTGGCTTTGCACACATTCCTGGCAAAAAGTGCTCACTGCAAGATTGAACATCCTGCACATGGAATTCCTGATTCTGAGTCTGCAACTGGCATTCGTTCTGATTCTGATAACACCAAGGGTAAAGGTATCATTGATAGCTGCACAAACGAGAGGTTGGAAACTGACTTGGGGAAAATGAGTCTTAAAAGTGATCTAAAGGACCCTAGCATGCCTAATCTTTTAGTTGAGTTTGCAAACTCAGCAGTAGATTTCAACAATGGCATTTCTGATTCTAATCAACGGGTTCAACTTGCTTCATATGTCAGTTCACCAAACTTGAATCCAAGATATCCTTGTGACATGGAAGGGACTTCATTGGGCAATTCATTGTCTGATACATATGGGGCGAGAACATCTTGTTATGTTGAGGTGCCTCTTGGTGCTGGAACAATTACTGGAGTGAGTATTGAAGGACCATCTGAGGAAGGATCTTGCTACCATTCGGATAACAACAATACGTTGGTCAGGGATCAATCAAGACATTGTTTTTCATCGAGTTCTTCTAATGGGCCCACATCCAGTGATTGGGGAAGATATGGAACACCTTCGCTTTCATGGGGTGGCCATGTTGGCAGAAGACAAGTCAAACCTCATCCCAGAGGAAACTATGTAGATGAAGACGATGTATTTCTTAATATATTTGAAGGGGGATCACTTTTATATTGCAATATGTCTTTTGATGCACTTTTAAATGTCAGAAAGCAGCTTGAAGAAATAGGATTCCCATGCAAAGCTGTAAATGATGGTCTGTGGCTGCAGATGCTTCTTAGTCAGAGGGTACAAGAGATTGCTGCTGATACATGCAGAGTTTGTTCACTTATGACTATGTCTTGTACTTGCCAAAAGCAGTTTGCATTTTTACATGGATCTACTACCACTGGATCTTACATGCAAGAACATAATCATAACAATATGCCTGGGGGTGGAGGAAATATATATGTTGCTGAATCTTCTACAGGAGAAAGAAACGGCTCTTTTAGACCTGTACGAGTACATGTTAGAGGTGCTATTGATGGGCTTGCAGGTATTGGCCGTGGAACTACATTTGTTCCTGCAGCGGCTTCTCCTCCTACACGATTTGTCTTTTCTCGTGTACCATTTAGGGTTGGCAACAGAAACTACCCTCAGTCTGCCGCCAATGATGATTCAGAGGCACGTGCTGATCACAATGGAGACTTGTCTGGAGATGGATTGACAGCTTTAGTTGGGCTAAGCCAGGGAGGGAATTATGGAACCAATGTAAATACAGAGCTAACACAAAGGGGACATGAAATGGGTATGCAAAGTACTGCTGGCGGTGCAAGTACTGGTGGCATTCCCGTACAGATGTTAGAGACACCAGAACATACCGTTGGTATAGAATGGGAGAATGACAACAGCTCTTCTATATCATTGGATTTGAAAACACCTCTAAGCCATTTCCCCCCTTTTCGCTTTGGTGTAAGTTTTGAGGAAGTGCACAGGCTTGGTGATGGCCAGGTCAAGCATTCACCAGAAGTTTTCTATGCTGGTTCTTTATGGAAGGTCAGTATTCAGGCTTTTAATGATGAAGACCCCCAGGGACGGCGTACCCTTGGATTGTTTCTTCACCGGCGGAAGGCAGAGATAACTGATGTACACAGGAAGGTACATATGTATGTTGACTCACGTGAAAAGGTGACTGCACGGTATCAGTTGACTTGCCCATCCAAGAGAGAAATGTTGGTGTTTGGAAGCTTTAAACAAACGGGCACTCTTCTACCCAAAGCTCCTAAAGGATGGGGTTGGCGAACTGCTCTACTATTTGATGAACTTGCTGATCTTCTCCAAAACGGGGCCCTAAGGGTTATCGCTGTAGTGCAGCTTGTTTGA 2610 0.433 MENPQYPNNNNNPPPSPYQHQRTASIPKPQSHHSDNNDPTTAELRALDCNLASLCEHVQIEGFSSGSFSDIVVNAMGSTYHLHRLILSRSSYFRNMLHGPWKEASAAIVTLQIDDNNVNDEAIAIALAYLYGNHPKLNDNNAFRVLAAASFLDLQDLCAICTDFIISELWTSNFLAYQVFAENQDYGIHGERVRTACWGYLCQSGGMELREVLPKLSSHTLHALLTSNDLWISCEEKRFELALHTFLAKSAHCKIEHPAHGIPDSESATGIRSDSDNTKGKGIIDSCTNERLETDLGKMSLKSDLKDPSMPNLLVEFANSAVDFNNGISDSNQRVQLASYVSSPNLNPRYPCDMEGTSLGNSLSDTYGARTSCYVEVPLGAGTITGVSIEGPSEEGSCYHSDNNNTLVRDQSRHCFSSSSSNGPTSSDWGRYGTPSLSWGGHVGRRQVKPHPRGNYVDEDDVFLNIFEGGSLLYCNMSFDALLNVRKQLEEIGFPCKAVNDGLWLQMLLSQRVQEIAADTCRVCSLMTMSCTCQKQFAFLHGSTTTGSYMQEHNHNNMPGGGGNIYVAESSTGERNGSFRPVRVHVRGAIDGLAGIGRGTTFVPAAASPPTRFVFSRVPFRVGNRNYPQSAANDDSEARADHNGDLSGDGLTALVGLSQGGNYGTNVNTELTQRGHEMGMQSTAGGASTGGIPVQMLETPEHTVGIEWENDNSSSISLDLKTPLSHFPPFRFGVSFEEVHRLGDGQVKHSPEVFYAGSLWKVSIQAFNDEDPQGRRTLGLFLHRRKAEITDVHRKVHMYVDSREKVTARYQLTCPSKREMLVFGSFKQTGTLLPKAPKGWGWRTALLFDELADLLQNGALRVIAVVQLV 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04680 869 Gene3D Potassium Channel Kv1.1; Chain A 41 202 IPR011333 -
Trre16g04680 869 MobiDBLite consensus disorder prediction 626 647 - -
Trre16g04680 869 SMART BTB_4 69 169 IPR000210 GO:0005515
Trre16g04680 869 MobiDBLite consensus disorder prediction 15 41 - -
Trre16g04680 869 SUPERFAMILY POZ domain 63 167 IPR011333 -
Trre16g04680 869 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 12 869 - -
Trre16g04680 869 Pfam BTB/POZ domain 63 167 IPR000210 GO:0005515
Trre16g04680 869 MobiDBLite consensus disorder prediction 1 41 - -
Trre16g04680 869 ProSiteProfiles BTB domain profile. 69 139 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04680 Trre-Chr16 51154633 51160537 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre16g04680 BTB 2.2e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04680 - - tpra:123882109 1692.94