Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04671 ATGCAGAACGAGGAGGGAAAACTCATGGAGCTATACATTCCAAGGCAATGCTCTGCCACTAGCAGACTGATAATTGCAAAGGAACATACCTCTGTTAAAATCAACATTGGCCATTTGGATGAGACTGTCTGCACTGGTCCTTTTTTCATTTCCGCCCTCCATAGTTTCATCCCAGCACAGGTCTGTATTGATATATTATTGATTATTCTCTTAATGCATTGCTGA 225 0.4133 MQNEEGKLMELYIPRQCSATSRLIIAKEHTSVKINIGHLDETVCTGPFFISALHSFIPAQVCIDILLIILLMHC 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04671 74 Gene3D - 1 73 IPR038579 -
Trre16g04671 74 Pfam Ribosomal protein S21e 1 42 IPR001931 GO:0003735|GO:0005840|GO:0006412
Trre16g04671 74 PANTHER 40S RIBOSOMAL PROTEIN S21 1 67 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04671 Trre-Chr16 51115984 51116311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04671 1 64 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 58.462 6.75e-22 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04671 K02971 - pda:103718617 83.5741