Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04668 ATGCTTAGTCCTGAGGGAGAAATTAAAATAAGTTTTGGCTACAAATGCAATAGTGGTAGAGATATCCCTAGCGAGATCGCCGACGGCTACAAAAATCTTCCCATAGTCCGTAGAGCAAGTAGTTTCTCTTGTTTGTCAGGTGCAGCCTTAAGTGCAAATGCTACACTAGCTAACACAAACATCTGTAATGGTAAGATAGGTGTTGAAATCCTTCCAAGTTGGGATTCTCCTAATTCGTTTCGCAGAGTACCTTCTTCGCCAAGTCTTTCACGGTTCGAAAGACTTTCGTCTTCACTCCCAAATAGTCTCTCTTATTTAAGTTCCAGTCCTTCCACTACCAGTGATAGCTTTGAATATGACTCCTGCCAGTTGAAATGCGTGAGTGATCGTCCCAGTACCGACGGTTTTCTTATTGCTAAAGAAGTTCAAGTAGCAGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGTTGGCTCTTTTGTGCAATTTATGATGGATTTAATGGAAGAGATGCAGCTGATTTTCTGGCCGGTACCCTCTACGAAACCATCATATCTTACCTAGATAAGTTAATTTGGGAATTGGAGCCGGGTTCCATCACAACTTCAGACCATGCGGATTTGGGTGAATTCCTTCGATATAAGTTGGATGATAGTCTTCATTGTCACGAGGATCATTCTCTGTCAAAATCAACACGGGAGTCTTTTTCGCGTGGGGTACTTGATAGCCTCGACCGTGCACTTAGTCAGGCTGAGAATGACTTCTTGTACATGGTTGAGCAGGAAATGGGAGAACGTCCGGATTTAGTTTCTATTGGATCTTGTGTTTTGCTTTTGCTTCTTCATGGTAATGATTTGTATACACTGAATCTTGGCGACAGTAGAGCAGTGCTAGCGACATGCAGTAGCGGTGACAGAATGAATAAGAGTGAGAGACTCGAGGCTATACAGCTTACAGATAGTCACACTGTTGATAATGCAGCTGAAAGGACTAGACTCGTGGCTGATCATCCTGATGATCCCAAGGTCGTCATAGCAGGAAAAGTGAAAGGTAAGTTGAAGGTTACTCGTGCATTTGGAGTTGGCTACTTGAAAAAGAAAAATCTGAATGATGCGTTGATGGGAATCCTTAGAGTTCGTGATCTTACGAGCCCACCATATGTTTCCACTAAACCATCATTGAATGTGCATAAAATCTCAAATTCTGATCAATTTGTTATAGTAGGAAGTGATGGTTTATTTGACTTCTTCAGCAATGAAGAGGCAGTGAAGCTTGTTGAGTCTTATATCTTAACCAATCCTTTTGGCGATCCTGCAAAGTTTCTCATAGAGCAGCTTGTAGCTAGAGCGGCTGATTCCGCAGGTTTCAGCATGGAAGAGTTGATGAATGTTCCAGCCGGGAGGAGAAGAAAGTACCATGATGATGTTACTGTAATGGTGATCATGCTTGGAATGAATCAGAGAACTTCAAAAGCTTCAACTTGTATCTAA 1509 0.4221 MLSPEGEIKISFGYKCNSGRDIPSEIADGYKNLPIVRRASSFSCLSGAALSANATLANTNICNGKIGVEILPSWDSPNSFRRVPSSPSLSRFERLSSSLPNSLSYLSSSPSTTSDSFEYDSCQLKCVSDRPSTDGFLIAKEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYETIISYLDKLIWELEPGSITTSDHADLGEFLRYKLDDSLHCHEDHSLSKSTRESFSRGVLDSLDRALSQAENDFLYMVEQEMGERPDLVSIGSCVLLLLLHGNDLYTLNLGDSRAVLATCSSGDRMNKSERLEAIQLTDSHTVDNAAERTRLVADHPDDPKVVIAGKVKGKLKVTRAFGVGYLKKKNLNDALMGILRVRDLTSPPYVSTKPSLNVHKISNSDQFVIVGSDGLFDFFSNEEAVKLVESYILTNPFGDPAKFLIEQLVARAADSAGFSMEELMNVPAGRRRKYHDDVTVMVIMLGMNQRTSKASTCI 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04668 502 CDD PP2Cc 149 487 IPR001932 -
Trre16g04668 502 SMART PP2C_4 127 487 IPR001932 -
Trre16g04668 502 Gene3D - 111 498 IPR036457 -
Trre16g04668 502 ProSiteProfiles PPM-type phosphatase domain profile. 137 489 IPR001932 -
Trre16g04668 502 Pfam Protein phosphatase 2C 239 444 IPR001932 -
Trre16g04668 502 SUPERFAMILY PP2C-like 150 490 IPR036457 -
Trre16g04668 502 PANTHER PROTEIN PHOSPHATASE 2C 125 487 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04668 Trre-Chr16 51105253 51107079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04668 4 502 PP2C-type Phosphatase Gene Family AT3G16560 64.554 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04668 - - gmx:100808304 784.252