Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04652 ATGTTTCATTATCACCGCCTCAGAGCTATTCTCAATCCTCAAATCCCAAAATGTTACCTTCTTCACCCGACCCATTTTCTCAAACCATTCTCCACCACCACCACTTCAGATTCAGATCAACTATCTTTCACAGTTTCATACCTCACCAACACTTGCGGTTTATCTCCAAACAAAGCTCTTAAAGCATCAAAACTAATTCGTTTCAACACCCCTAATAAACCTGATTCCGTTATCGCCTTTTTCAAAACCCACGGTTTCTCCAATGACCAGATACAATCCATCATTCACAGAGCACCAGTACTCTTAAATTTCGACCCCATCAAAACCATTTTGCCAAAGTTTCAATTTTTATCCTCTAAAGGTGCTTCTCCATCTGACATTGTTGACACCGTCACCAGAGCCCCCAATTTCCTCCGTGCAAGCCTTGAAAAACAATTAATCCCTGGTTTTGAATTGGTAAGAAGTTTCTGTCCCTCTAATCAAAAAGCTATTAATTCAATAATTGCTTGTCCTACTTCTATCAGTGATATTCGTATGAAACCAAATATTCAACTTTTGCTTGATTTTGGGGCCACTCCTGCAAGCATTTACCGTTTACTTACAACTAGACCTTCTATAATTTGTTCTTCTGATTGGAGGAAGGTTTTGGAGGAGATTAAGGAATTAGGGTTTGATCCTTCATCATACAAGTTTTGTATGGCATTATTAGCCAAAAGGGCTATCACCAAATCTCAATGGGATGCTAAAGTTGGTGCCTTGAAGAGTTGGGGTTGTTCTCAAGATGAAATTTTTAATGCTTTTAAAAAACAGCCTAACATTATGCTACGGTCTCCGGACAAATTGAATGCGGTTATGCGTTTTTGGATCAAGCAGTTCGGTTGGGATCCTTTATTGCTCCTGTCAGCTCCTGGTCTTTTTGGATTTAGTATAGAGAAAAGGCTTATTCCGAGGGCTTCTGTTGTCCAGTATCTTCTTTCCAAAGGTTTGTTGAAGAAAGATGCCAGCTTAGTTACACCATTTTATTTGACCGATGAGTTGTTCCGGCAAAGGTATGTGAATCGTTTCAAGGAGGAAGCATATAGGCTATTAAAGCTATATCAGGGGGAGGATTCTAGCATCCCGTGTCAGGATAAGTTGATTGCTTGA 1146 0.3979 MFHYHRLRAILNPQIPKCYLLHPTHFLKPFSTTTTSDSDQLSFTVSYLTNTCGLSPNKALKASKLIRFNTPNKPDSVIAFFKTHGFSNDQIQSIIHRAPVLLNFDPIKTILPKFQFLSSKGASPSDIVDTVTRAPNFLRASLEKQLIPGFELVRSFCPSNQKAINSIIACPTSISDIRMKPNIQLLLDFGATPASIYRLLTTRPSIICSSDWRKVLEEIKELGFDPSSYKFCMALLAKRAITKSQWDAKVGALKSWGCSQDEIFNAFKKQPNIMLRSPDKLNAVMRFWIKQFGWDPLLLLSAPGLFGFSIEKRLIPRASVVQYLLSKGLLKKDASLVTPFYLTDELFRQRYVNRFKEEAYRLLKLYQGEDSSIPCQDKLIA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04652 381 Pfam mTERF 246 347 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 Pfam mTERF 79 207 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 PANTHER CGI-12 PROTEIN-RELATED 40 357 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 Gene3D Transcription termination factor 3, mitochondrial 55 174 IPR038538 -
Trre16g04652 381 Gene3D Transcription termination factor 3, mitochondrial 175 364 IPR038538 -
Trre16g04652 381 SMART mt_12 164 192 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 SMART mt_12 296 330 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 SMART mt_12 197 225 IPR003690 GO:0003690|GO:0006355
Trre16g04652 381 FunFam Mitochondrial transcription termination factor-like 142 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04652 Trre-Chr16 50972070 50973215 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre16g04652 mTERF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04652 K15032 - gmx:102666739 353.984