Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04651 ATGTTTCATTATCACCGCCTCAGAGCTATTCTCAACCCTCAAATCCCAAAATGTTACCTTCTTCACCCAACCCACTTTCTCAAACCATTCTCCACCACCACTTCAGATTCAGATCAACAATCTTTCACTGTTTCATACCTCACCAACACTTGCGGTTTATCACCACAAAAAGCTCTTAAAGCATCAAAACGATTTCATTTCAAAACCCCCAAAAAACCCGATTCCATTATCGCTTTTTTCAAAACCCACGGTTTCTCCAATGATCAGATACAATCCATCATTCACAAAACACCATCACTCTTAACATTTGACCCCATCAAAACCATTTTACCAAAGTTTCAATTTTTATCTTCTAAAGGTGCTTCTACATCTGACATTGTTTACACTGTCACCAGATTCCCCCATTTTCTTGGTTCAAGCCTTCAGAAACAGATTATCCCTACTTTTGAATTGGTAAGAAGTTTCTGTCCTTCTGATCAAAAAGCTATTACTATAATAATTGCTTCTCCTTCTTCCATTAGATATAGCCGCATGAAACCAAATGTCAATTTTTTACTTCATTTAGGGGTTACTCCTACAAGCATTTACCGTTTGCTTACTACTAGAATTTCTACAATTTGTTCTACTGATTTGAAAATAGCTGTGGAGGAGATTAAGGAATTAGGGTTTAATCCTTGTAAATTCAGTTTTGTTGTGGCATTATTGGTTAAAAAGGTTATCACTAAATCTCAATGGGATGCTAAAGTTGATGCCTTAAAGAGTTGGGGTTGTTCTCAAGATGAAATTTTTAATGCTTTTAAAAGACAGCCTAATTTTATGCTACGGTTTACGGATAAACTCAATGCGGTGATGCGTATTTGGACCAAGCAGTTTGGTTGGGATCCTTTAGTACTCCTGGCAGCACCTGATATTTTCGGATTTAGTATAGAGAAAAGGCTTATTCCAAGGGCTTCCGTTGTCCAGTATCTTCTTTCCAAAGGTTTGATGAAGAAATATGCCAGCTTAGTTACACCATTTTATTTGACTGATGAGTTGTTCCTGCAAAAATATGTGAATCGTTTCGAGGAGGAAGCATATATGCTATTAAAGCTATATCAGGGAGAGGATTCTAGCATCCAGTGTCTGGATAAGTTGTCAAAGCATGTTTTGGTGTAA 1155 0.3706 MFHYHRLRAILNPQIPKCYLLHPTHFLKPFSTTTSDSDQQSFTVSYLTNTCGLSPQKALKASKRFHFKTPKKPDSIIAFFKTHGFSNDQIQSIIHKTPSLLTFDPIKTILPKFQFLSSKGASTSDIVYTVTRFPHFLGSSLQKQIIPTFELVRSFCPSDQKAITIIIASPSSIRYSRMKPNVNFLLHLGVTPTSIYRLLTTRISTICSTDLKIAVEEIKELGFNPCKFSFVVALLVKKVITKSQWDAKVDALKSWGCSQDEIFNAFKRQPNFMLRFTDKLNAVMRIWTKQFGWDPLVLLAAPDIFGFSIEKRLIPRASVVQYLLSKGLMKKYASLVTPFYLTDELFLQKYVNRFEEEAYMLLKLYQGEDSSIQCLDKLSKHVLV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04651 384 Pfam mTERF 243 346 IPR003690 GO:0003690|GO:0006355
Trre16g04651 384 Pfam mTERF 78 281 IPR003690 GO:0003690|GO:0006355
Trre16g04651 384 PANTHER CGI-12 PROTEIN-RELATED 39 355 IPR003690 GO:0003690|GO:0006355
Trre16g04651 384 FunFam Mitochondrial transcription termination factor-like 141 358 - -
Trre16g04651 384 Gene3D Transcription termination factor 3, mitochondrial 165 363 IPR038538 -
Trre16g04651 384 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Trre16g04651 384 SMART mt_12 163 191 IPR003690 GO:0003690|GO:0006355
Trre16g04651 384 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Trre16g04651 384 SMART mt_12 295 329 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04651 Trre-Chr16 50966162 50967316 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre16g04651 mTERF 5.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04651 K15032 - gmx:102666739 338.191