Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04648 ATGCTGAAATTCTTCACCACCAACAACAATCTTTTGCTCCTATTCACAACACCATCTTCTTCATCATGTGCTACTTCTTCTCTTATTGCAAAACATCACCACTATCCATCAATTTTCAAATTCTTCACCACTTCCACCACCTTCGAACAACCACAACAATCTTTCACCATCTCTTACCTCATCAACAACTGCGGTTTCACCCCACAAACCGCTTCCAAAGCTTCCCACTATGTCACTCTCTCCAACTCCCAAAAACCTGATTCAGTTCTCGCTTTCTTCACAACCCACGGTTTCTCTAACTCTCAAATACGAGGCATCGTCAAAAGGGAACCCCGGTTACTTTCACTCAACCCCAACAACGTTTTATTACCAAAGTTTCAATTTTTACTCTCCCAAGGTGTTTCTAACTCTGATCTTATTCACATTGTTAATGCTAATCCTAGATTTCTTAGAAGAAGTTTAGAGAATCATATCATTCCTACTTATGAATGTGCAAAAGGGCTTCTTCAATCTGATAAAAAAATTATTGCTTGTGTAAAACGTTATGGTTTTCTTTCTCAAGATCATTTGCCTAAGAATGTTAAATTGTTGCTTGATAATGGAGTTTCTCATTCAAATATTGTTAGATTGTTTCAGTGGTGGCCTAGTATATTTGAGTCATTTGATTTGTTGAACATTGTTGAGGAATTGAAGAAGCTCGGTTTCGATTCCAAAACTTCCACTTTTAGCATAGCCTTTCTTGCTAAGAAAACTGTTTCTAAAGCTAAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGTTGGTCTGATGAACATATTCTTCAAGCATTTAAGAAGCAGCCTTTTTGTATGCTGTCATCCCCTCGTAAAATGAATGCAGTCATGAATGTTTGGGTTAATCACTTAGGTTTCGATTCTTTGGACCTCACTAGAGCTCCTGGAATTTTGCAGCTCAGTCTCGAGAAGAGGATTATTCCTAGAGGTTTAGTTGTCCAGTTTCTTAACTCAAAAGGCCTTCGACAAAAGGATGCAAGTATATATACACCATTTCTTGTATCTGAGAAGTTGTTCCTGGAAAAGTTTGTGAACCGTTTTGCGGAGCATTCTTCTGATCTGTTAAAGCTTTACGAGGAAAAAATGAATCTTGCAGACAGCAGGAATGGCCTTCAGATGGTGTGA 1182 0.3824 MLKFFTTNNNLLLLFTTPSSSSCATSSLIAKHHHYPSIFKFFTTSTTFEQPQQSFTISYLINNCGFTPQTASKASHYVTLSNSQKPDSVLAFFTTHGFSNSQIRGIVKREPRLLSLNPNNVLLPKFQFLLSQGVSNSDLIHIVNANPRFLRRSLENHIIPTYECAKGLLQSDKKIIACVKRYGFLSQDHLPKNVKLLLDNGVSHSNIVRLFQWWPSIFESFDLLNIVEELKKLGFDSKTSTFSIAFLAKKTVSKAKWDEKVETFKKWGWSDEHILQAFKKQPFCMLSSPRKMNAVMNVWVNHLGFDSLDLTRAPGILQLSLEKRIIPRGLVVQFLNSKGLRQKDASIYTPFLVSEKLFLEKFVNRFAEHSSDLLKLYEEKMNLADSRNGLQMV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04648 393 Gene3D Transcription termination factor 3, mitochondrial 171 375 IPR038538 -
Trre16g04648 393 FunFam Mitochondrial transcription termination factor-like 154 370 - -
Trre16g04648 393 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Trre16g04648 393 PANTHER CGI-12 PROTEIN-RELATED 52 365 IPR003690 GO:0003690|GO:0006355
Trre16g04648 393 Pfam mTERF 90 238 IPR003690 GO:0003690|GO:0006355
Trre16g04648 393 Pfam mTERF 188 358 IPR003690 GO:0003690|GO:0006355
Trre16g04648 393 SMART mt_12 307 341 IPR003690 GO:0003690|GO:0006355
Trre16g04648 393 SMART mt_12 275 306 IPR003690 GO:0003690|GO:0006355
Trre16g04648 393 SMART mt_12 104 135 IPR003690 GO:0003690|GO:0006355
Trre16g04648 393 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04648 Trre-Chr16 50936005 50937186 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre16g04648 mTERF 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04648 K15032 - gmx:102667698 376.326