Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04647 ATGAAGTATTACCAAATCAGCATTCGTCCATTATTAGATGATCGTCTAATGCGTTTAGAAGCAGCAGCGTTTATCAATCAAGTAAAAGTTGTGTTTAAAGATAACAATGAAAAATATTCTGAGTTTATACAAGTCATGAAGGATTTTGATGATAAAAAAACGGATGCATTAAGTGTCGTTAAAACGGCGATTAAGCTGTTTAAAGGACATGCCGATTTACTTTTGGAATTCAACAGCTTCATGCCAGAAGGATATCTATTATCAAAACAAATTTCCTTAGTTCCTTTGTATCATGATCATAAACAGGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATAAAGTAAAACTTGTGTTTCAAGACAACAAAATGGAAATGTATTTTGAGTTTTTACAAGTCATCAATGATCACAAGGCTCAAGGAATTGACATAAGAGGTGTTGTGGCAGTAGTGAAAGAGCTGTTTAAAGGGCATAAACATTTAATTTTGGGATTCAATGCCTTCTTACCAAAGGAATATAAAATCCAACTTCCATCCAAGATTCATGGTCATAATAATAAGACTGGGAAAAGAGTGAAGAAGGTAGCAGAGAACTGTGAACTTCCTTGGGATGTCCTTGATATCATTTCCAAAACACTAGATTTCGATGACCACGTCGAATTTGCTTGTGTGTGCAAGAGTTGGAAGGTATTTCATAAAATGTATTGGAGATTTGCATTCCAAGAACCACTACTTGTTCACAAGTCTTCCTATGTTAAGAAATCTTATTCCTTTATCAGCATTTCTAACCAAAAAGATTATCAATCAAAGATGATCAATTATTACTGGCACTTTGCTTATTCTGGTTCTTCAAGCGGATATTTGATCATGACAGGGAACAATAATTCATTTCTGCTAATGAATCCATTTACGAGAAGAAAGAAGGTAATCAATACCTCAACCTTTAAAGTAAACTTTTCTTACTTTGCCTACCATGTCTTACTTGCTTTTCGAAAAGGCTCCGATGAATTTGTTTTACTGGCTTTATGTAAAAGTACCAACAGTTTGCATGTCTATCAATCTCGAAATGTTGATTGGGTTACTTGTTCAAAAATGGGATATCCATGGCTGATTGTTGACTTTGTTGTTTTGCATAACACTATATATGTTGTCACCGATAAGGGCAACATAGGGGTACTCAATTTAAATTCTACAAATGTAGAATTTTTAGAAATTCAGAGTATTCCTAGTGTAACTTCTTCGTCACTCCTAAGGTTGGTTAGTTGCGATGGACAACTTTTTGTGGTTCATACTAAGCCCAGCATAGCGTTTGATGTGTACAAGATTGAATTCTCAACTATGAATTATGTCAAATTGGAAAATTTAGGCGACATTGCATTATTTTATGCTCCGGGGGGGAAATACTATGCATTAAGTAACCCGTACATGTGGGGTTATGAAAGCAACTCGGTGTATGTCATTAATCATTCAACTACAAGATGCACAGTGTATTTAGGGGTTGATCACAAACTGCCAGAATACACTAATTATGATAGATTCCAAGCTCCTCCTCCTCATAATGAAAGACCCTCCTTGTTGGACTGGTATTTTAGACATCTACACTACGAGGTAGACTATGATCTCTAG 1629 0.3511 MKYYQISIRPLLDDRLMRLEAAAFINQVKVVFKDNNEKYSEFIQVMKDFDDKKTDALSVVKTAIKLFKGHADLLLEFNSFMPEGYLLSKQISLVPLYHDHKQGHQLVIKDAFLNKVKLVFQDNKMEMYFEFLQVINDHKAQGIDIRGVVAVVKELFKGHKHLILGFNAFLPKEYKIQLPSKIHGHNNKTGKRVKKVAENCELPWDVLDIISKTLDFDDHVEFACVCKSWKVFHKMYWRFAFQEPLLVHKSSYVKKSYSFISISNQKDYQSKMINYYWHFAYSGSSSGYLIMTGNNNSFLLMNPFTRRKKVINTSTFKVNFSYFAYHVLLAFRKGSDEFVLLALCKSTNSLHVYQSRNVDWVTCSKMGYPWLIVDFVVLHNTIYVVTDKGNIGVLNLNSTNVEFLEIQSIPSVTSSSLLRLVSCDGQLFVVHTKPSIAFDVYKIEFSTMNYVKLENLGDIALFYAPGGKYYALSNPYMWGYESNSVYVINHSTTRCTVYLGVDHKLPEYTNYDRFQAPPPHNERPSLLDWYFRHLHYEVDYDL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04647 542 SUPERFAMILY PAH2 domain 14 82 IPR036600 GO:0006355
Trre16g04647 542 SUPERFAMILY Galactose oxidase, central domain 272 489 IPR011043 -
Trre16g04647 542 CDD F-box_SF 201 230 - -
Trre16g04647 542 Gene3D Paired amphipathic helix 20 82 IPR036600 GO:0006355
Trre16g04647 542 Gene3D Paired amphipathic helix 111 171 IPR036600 GO:0006355
Trre16g04647 542 SUPERFAMILY PAH2 domain 111 172 IPR036600 GO:0006355
Trre16g04647 542 PANTHER OS06G0113600 PROTEIN 179 504 - -
Trre16g04647 542 Pfam Paired amphipathic helix repeat 37 80 IPR003822 GO:0006355
Trre16g04647 542 Pfam Paired amphipathic helix repeat 127 170 IPR003822 GO:0006355
Trre16g04647 542 ProSiteProfiles PAH domain profile. 9 84 IPR003822 GO:0006355
Trre16g04647 542 ProSiteProfiles PAH domain profile. 94 173 IPR003822 GO:0006355
Trre16g04647 542 Pfam F-box domain 201 230 IPR001810 GO:0005515
Trre16g04647 542 FunFam Paired amphipathic helix protein Sin3 110 171 - -
Trre16g04647 542 SUPERFAMILY F-box domain 200 245 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04647 Trre-Chr16 50931605 50933999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04647 6 95 WRKY Transcription Factor Family AT4G12020 34.375 5.75e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g04647 PAH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04647 - - cam:101488742 639.802