LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre16g04646	ATGCTGAAATTCTTCACCACCACTACACTTGTTCCCTCCAAGAACAATCTTTTGCTCCTATTCACAACACCATCTTCATCATGCTCTATTTCAAAACATCACCACTATCCATCAATTTTCAAATTCTTCACATTGTTACTCTCCAACAACGTTTTTTTACCAAAGTTTCAATTTTTACTCTCCAAAGGTATTTCTAACTCTGATCTTATTCACATTGTTAATGCTAACCCTAAATTTCTTAGAAGAAGTTTAGAGAATCATATCATTCCTAATTATGAATGTGTAAAAGGGCTTCTTCAATCTGACAAAAAAGTTATTGCTAGTGTAAAACGGTTTAGTTTTCTTTGTCAAAATCAACTGCCAAATAAGGTTAAATTGTTGCTTGATAATGGAGTTTCTTATTCAAATGTTGCTAGATTGTTTCATTGGTGGCCTAGTATACTTAACTCATATGATTTGTTGAATACTGTTGAGGAATTGAAGCAACTCGGTTTCAATTCATCAACTTCGGCTTTTAGTAAGGCGTTTCTTGCTAAGAGAACCGTTACTAAAGCTAAGTGGGATGAGAAAGTTGAAATCTTTAAGAAATGGGGTTGGTCTGATGAACATATTCTTCAAGCATTTAAGAAGCAGCCTTTTTGTATGCTGATATCCCCTCGTAAAATGGATGCAGTCATGAATTTTTGGGTTAATCACTTAGGTTTCGATTCTTTGGACCTCGCTAGAGCTCCTGGAATTTTTCAGTGCAGTCTCGAGAAGAGGATTATTCCTAGAGGTTTAGTTGTCCAGTTTCTTATCTCAAAAGGCCTTCGACGAAAGGATGCAGGTCTATATACACCATTTGTTGTATCTGAGAAGTTTTTTGTGGAAAAGTTTGTGAACGGTTTTGCGGAGCATTCTTCTGATCTGTTAAAGCTTTACGAGGAAAAAATGAATCTTGCAGATAGCAGGAATGGCCTTCAGATGGTGTGA	972	0.3601	MLKFFTTTTLVPSKNNLLLLFTTPSSSCSISKHHHYPSIFKFFTLLLSNNVFLPKFQFLLSKGISNSDLIHIVNANPKFLRRSLENHIIPNYECVKGLLQSDKKVIASVKRFSFLCQNQLPNKVKLLLDNGVSYSNVARLFHWWPSILNSYDLLNTVEELKQLGFNSSTSAFSKAFLAKRTVTKAKWDEKVEIFKKWGWSDEHILQAFKKQPFCMLISPRKMDAVMNFWVNHLGFDSLDLARAPGIFQCSLEKRIIPRGLVVQFLISKGLRRKDAGLYTPFVVSEKFFVEKFVNGFAEHSSDLLKLYEEKMNLADSRNGLQMV	323

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre16g04646	323	Gene3D	Transcription termination factor 3, mitochondrial	101	299	IPR038538	-
	Trre16g04646	323	Pfam	mTERF	50	115	IPR003690	GO:0003690\|GO:0006355
	Trre16g04646	323	Pfam	mTERF	117	281	IPR003690	GO:0003690\|GO:0006355
	Trre16g04646	323	FunFam	Mitochondrial transcription termination factor-like	84	300	-	-
	Trre16g04646	323	SMART	mt_12	205	236	IPR003690	GO:0003690\|GO:0006355
	Trre16g04646	323	SMART	mt_12	237	271	IPR003690	GO:0003690\|GO:0006355
	Trre16g04646	323	SMART	mt_12	37	65	IPR003690	GO:0003690\|GO:0006355
	Trre16g04646	323	SMART	mt_12	138	166	IPR003690	GO:0003690\|GO:0006355
	Trre16g04646	323	SMART	mt_12	70	101	IPR003690	GO:0003690\|GO:0006355
	Trre16g04646	323	PANTHER	CGI-12 PROTEIN-RELATED	33	295	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre16g04646	Trre-Chr16	50928237	50929208	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Trre16g04646		mTERF	2.2e-15	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre16g04646	K15032		-	gmx:102667698	296.204