Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04645 ATGAAATTGATCAGGAGAGGATCTCATCTCGTATTTTGGAGCTCAGTAAAGAGTGAAATGGTGGATAACAATGTTGGAGGAAGTTGTTCTAATTACAATGAAAATGGTGGAATAATAAAGGAACAAGATAGGTTGTTACCAATAGCAAATGTTGGGAGGATAATGAAGCAAATATTACCTCAAAATGCAAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGTGTGTCAGAGTTTATAAGCTTTGTGACAAGTGAAGCATCAGAGAAATGTAGGAAAGAAAGAAGAAAAACAGTGAATGGTGATGATATTTGTTGGGCTTTGGCTACACTTGGTTTTGATGATTATGCTGAGCCAATGAGAAGGTATTTGCATAGATATAGAGAATTAGAGGTTGATAGAACACCAAATAATAATAATAATAATGTTCAAGATAGAGGAAATTAA 450 0.3378 MKLIRRGSHLVFWSSVKSEMVDNNVGGSCSNYNENGGIIKEQDRLLPIANVGRIMKQILPQNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDRTPNNNNNNVQDRGN 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04645 149 Gene3D Histone, subunit A 37 148 IPR009072 GO:0046982
Trre16g04645 149 ProSitePatterns NF-YB/HAP3 subunit signature. 76 92 IPR003956 GO:0005634|GO:0006355|GO:0043565
Trre16g04645 149 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Trre16g04645 149 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Trre16g04645 149 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Trre16g04645 149 FunFam Nuclear transcription factor Y subunit B-3 34 149 - -
Trre16g04645 149 SUPERFAMILY Histone-fold 42 143 IPR009072 GO:0046982
Trre16g04645 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Trre16g04645 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 30 136 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04645 Trre-Chr16 50919848 50922439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04645 34 140 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.766 4.33e-57 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Trre16g04645 CBFD_NFYB_HMF 5.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04645 K08065 - mtr:11422870 216.853