Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04625 ATGGGCCCTACCAGGAAATCTAGAAGTGTAAATAAGAGGTTCTCTAATATTCGTGAGGCCGCATCTAGTAAAGATAAAGATGCAGCAAATACCAGCAAGAATCGGCAGAAGGCTAGTCCTGGTATTCAAAAGAAGAGAAAATTGGCCGACATGTTAGGATCGCAATGGAGTAAGGAGGAGCTTGAACGTTTCTATGAAGCTTACCGTGAATATGGGAAAGATTGGAAGAAGGTTGCTCTTGCAGTACGTAATAGGACCATGGAAATGGTAGAAGCTCTGTACACTATGAACAGGGCATACTTATCTCTTCCAGAGGGAACTGCTTCTGTTGTTGGACTGATAGCAATGATGACAGATCATTATAGTATACTGGGAGGAAGTGACAGTGGAAAAGAAAGCAATGAAGACACAGAAGTACGTAAAAAGTCTAAAAAACGTCCACGGGGAAAGCCAAATGACAATAAAGTAGTAGATGGACACTTTTCAGATCATTCTCAGCCACAATCTGTTGCATCAGACGATGGTTGCCTGTCATTGTTGAAGAATAGGCATTCTGGAATTAGGCCTCATGCCGTTCGAAAAAGGACTCCTCGTGTCCCTATTTCTTATTCTATTGGCAAAGATAATGGGGGAAAGTTTTTTTCATCTGCAAGGCAGGACTCCAAACAAATGGTTGATACAAATGATGTCACTCATAAAATTGCATTAGCTTTGGCGGAGGCTTCACAAAGAGGTGGTTCTTCAAAAAAAATTGGATCGCCAAACAAGAAAAACATGCCATCACCCAAGCTTAAAATTGGGAAGAAGCATGTCAAACCAGAAATAGTCAGAGCTAAGTTCGGCAACACTGACATGGATGAGGGTAGTTCTGAGTTGAGTTTAGGAAGTACAGAAGGTGATATTGGAGATTATTCTAGAAAATTAATTCATCGGAGCGGTAGAGAAAATACTGGAAGAGGAAAGAATCAGGAAAAGGGAAAAAAACGCTACAGAAAGAATTTAGAATCCGAGGAAAATATAAACAAGCATTTGAATGACATAAAGGAGGCTTCCAGTGGGACCGATGATGGTAAAAACCAGAGTTCCTTCAAGTCCAATTTTGACACAGATTTTGCAAATGCAAAAAGTGTGAGGTCTTCTCACAAGGGTCCCGGAAAGAAAAGTAAAAAACTACTTTTTGAGAAAGATGAAGGTTCGGCTTTCGATGCTCTGAAAACTTTGGCTGATCTATCTTTGATGATGCCAGAAACAAACCCCGACACTGAATCGTCTGTGCAGTTCAACGAAGGAAACCATGATATGGTTGATGAGTCAAAAATGGAAACAGATAATGGAAACAGTTCGAGAAAATGGGGCAAGGTTTTTTCTGATAAAGGAGCTGCTGCTCCCAAAGCAGAGGTAGCGTACCAGATTAATGCAGGAAGCAGGAAAAGAAAACAAAAATCTGTTACCTTAAAAAATGATGAAACACATACTGGTTCTCATTTAAGTGGCTCCCCGAAAATGAAGGTTACTGATGAGGTGAAGTCCATGGTTAAAGGCAAGCGATCATCTGTCAGTACAGCTCATTCCAGACAACTAAAATGGGAGAGATCCCTAGGAATAATTTCGCCTTCAAATATTGTTGACAAAGCAAGAAGGGATGGTTCATATGTTTCCCCCATAAAAGTTTTGTCTACTAACCAAGTCGGTCAAGTAAACAGAGACCGACCTAGAAGAAAGATGGAAAAACCAAAACCAATGGTACAAAAAGATCATACAGTGTCTGAAAAATCCATTGCTTCATACCGGTGGAATAGTATTGAACGTCACAAGGGAAAGCTTATTAATTGTTTGTCTTCATATCAAATGCGGCGATGGTGCACCTCTGAATGGTTTTATAGTGCTATTGATTATCCATGGTTTTCAAAGAGAGAGTTTGTAGAATACTTAGACCATGTTGGACTGGGTCATGTTCCCAGATTGACTCGTATTGAATGGGGAGTCATTAGAAGTTCTCTTGGTAGACCACGAAGATTTTCAGAGCAATTTTTGATAGAAGAAAAACATAAACTTAATCAGTACCGAGAATCTGTCAGATCACATTATGCTGAAGTCCTTGCTGGTACCAAGGAAGGGCTACCTGCTGATTTGGCCCAGCCATTAATTGTTGGGCAGCGTGTTATTGCTATTCATCCGAAAACAAGGGAAATTCATGATGGAAGCATACTGACTGTTGACCATTGTAGATACCGGGTTCAGTTTGACCAGCATGAACTTGGGGTTGAATTTGTCATGGATATTGACTGCATGCCTTTGTATCCATCCGAGAATATGCCCATGTCTTTGATAAGACACCATATCACTCCTAGAATAAATGAGAACCTTCGTGAGCTTACGCGTAATGGGAAACTAGCACAAAGAAAGATCTCTGAGCACACAATATTCTCCCCAAGTGATAACTCAGATGCCATAAAAGGTCGTTGTGTACCACCCACTATGCATGGGTTTTCTTCAAGCTGCAAATCACAAGCAAAAGCTGCAGGCAGTGAGATTTGTAATGGCCAATCAGCATCAAGTTCTCAGTCTTCCTTTCTTGATAGAGTCCATTCAAAAGAAGCTGATATATTAGCTATTTCAGAATTGACTCGTGCTCTAGAAAAGAAGGAACTTGTGTTGTCTGAACTGAAGCAAATGAATGATGGGGTATCAGAAAGCCAGAAATACGGAGACAACTCGGTGAAAGACTCGGAACCTTTTAAAAGGAATTATGCGTCAGTACTAAAGCAATTATCTGAAGCAAATGAACAGGTTTCTTCTGGCTTGTTTTGCTTGAGGCAACGCAATGCATATCAAGCAAGCTCCTCAGTTTTGTCATTGAAGCCCATGCCAAATTTTGATGATCCTGGTGGTCAGGCTAGCTCTTCCAATTGTTCAGCTTGCCACAACCAAGAATCTATATCTCAAAGTCATATAGCTGAAATTGTTGAAAGTTCTAGAAGAAAAGCCCGAACCATGGTTGTTCAAGCTGCTCAGGCAATGTCAGTTTTTAGAAAGACAGAAAAGGTTGAAAGAATTGAGGATGCAATAAATTTTATCAATAACCGGATTCCGGTCGATGACTCTACTGCTTCAGCCACAAATTTTCTTCCCCTAGATTCTATTACTTTGGCTTCTCGGGATCAATTGGCTGCTAGCAGCACATTGAACTTTTTGGCAAGGTGTCATGTACAAGATGATGAACTTAACAGTTCATCTGACCAAAATGAAATGAAAATCCCCTCAGAACTCATATCTCATTGTCTAGCTACACTGCTCATGATTCAGAAGTGTACGGAACGACAGTTTCCCCCAGCTGATGTTGCGCAGGTATTAGATTCTGCCGTCACCAGTTTGCAGCCATTATGTTCAAAGAATCTTCCAATATATGGTGAAATACAGAAATGCATGGGTATCATAAGAAATCAGATACTGGCACTTGTACCTACCTAG 3471 0.4056 MGPTRKSRSVNKRFSNIREAASSKDKDAANTSKNRQKASPGIQKKRKLADMLGSQWSKEELERFYEAYREYGKDWKKVALAVRNRTMEMVEALYTMNRAYLSLPEGTASVVGLIAMMTDHYSILGGSDSGKESNEDTEVRKKSKKRPRGKPNDNKVVDGHFSDHSQPQSVASDDGCLSLLKNRHSGIRPHAVRKRTPRVPISYSIGKDNGGKFFSSARQDSKQMVDTNDVTHKIALALAEASQRGGSSKKIGSPNKKNMPSPKLKIGKKHVKPEIVRAKFGNTDMDEGSSELSLGSTEGDIGDYSRKLIHRSGRENTGRGKNQEKGKKRYRKNLESEENINKHLNDIKEASSGTDDGKNQSSFKSNFDTDFANAKSVRSSHKGPGKKSKKLLFEKDEGSAFDALKTLADLSLMMPETNPDTESSVQFNEGNHDMVDESKMETDNGNSSRKWGKVFSDKGAAAPKAEVAYQINAGSRKRKQKSVTLKNDETHTGSHLSGSPKMKVTDEVKSMVKGKRSSVSTAHSRQLKWERSLGIISPSNIVDKARRDGSYVSPIKVLSTNQVGQVNRDRPRRKMEKPKPMVQKDHTVSEKSIASYRWNSIERHKGKLINCLSSYQMRRWCTSEWFYSAIDYPWFSKREFVEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKHKLNQYRESVRSHYAEVLAGTKEGLPADLAQPLIVGQRVIAIHPKTREIHDGSILTVDHCRYRVQFDQHELGVEFVMDIDCMPLYPSENMPMSLIRHHITPRINENLRELTRNGKLAQRKISEHTIFSPSDNSDAIKGRCVPPTMHGFSSSCKSQAKAAGSEICNGQSASSSQSSFLDRVHSKEADILAISELTRALEKKELVLSELKQMNDGVSESQKYGDNSVKDSEPFKRNYASVLKQLSEANEQVSSGLFCLRQRNAYQASSSVLSLKPMPNFDDPGGQASSSNCSACHNQESISQSHIAEIVESSRRKARTMVVQAAQAMSVFRKTEKVERIEDAINFINNRIPVDDSTASATNFLPLDSITLASRDQLAASSTLNFLARCHVQDDELNSSSDQNEMKIPSELISHCLATLLMIQKCTERQFPPADVAQVLDSAVTSLQPLCSKNLPIYGEIQKCMGIIRNQILALVPT 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04625 1156 ProSiteProfiles Myb-like domain profile. 54 86 IPR001005 -
Trre16g04625 1156 ProSiteProfiles SANT domain profile. 51 88 IPR017884 -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 1 17 - -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 473 503 - -
Trre16g04625 1156 SMART sant 52 100 IPR001005 -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 18 32 - -
Trre16g04625 1156 SUPERFAMILY Homeodomain-like 51 99 IPR009057 -
Trre16g04625 1156 Coils Coil 327 347 - -
Trre16g04625 1156 Coils Coil 872 892 - -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 567 586 - -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 283 367 - -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 303 353 - -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 1 46 - -
Trre16g04625 1156 Pfam Myb-like DNA-binding domain 54 90 IPR001005 -
Trre16g04625 1156 PANTHER LIN-9 1 1156 IPR010561 GO:0006351|GO:0017053
Trre16g04625 1156 SMART DIRP_2 626 727 IPR033471 -
Trre16g04625 1156 Gene3D - 3 108 - -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 241 265 - -
Trre16g04625 1156 CDD SANT 56 90 IPR001005 -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 124 173 - -
Trre16g04625 1156 MobiDBLite consensus disorder prediction 562 586 - -
Trre16g04625 1156 Pfam DIRP 625 726 IPR033471 -
Trre16g04625 1156 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 86 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04625 Trre-Chr16 50753942 50768893 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g04625 DIRP 2.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04625 - - gmx:100811517 1713.74