Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04624 ATGGAGGAATCAGCTTCCGATAACGACAGACACAAAATCCGCAACATATGCATCTTAGCACACGTAGACCATGGCAAAACAACCCTGGCTGACCAGCTTATCGCGACGGCCGGTGGCGGCATGGTCCATCCAAAAGTGGCAGGTAAACTCCGTTTCATGGATTTCCTCGACGAAGAACAACGTCGTGCTATAACAATGAAAAGTTCATCTATTTCCCTTCACTACAATCACCACACAATTAATCTCATTGATTCCCCCGGGCACATCGATTTCTGCGGCGAAGTTTCCACCGCCGCTCGTCTTTCCGATGGAGCACTTCTTCTTGTTGATGCTGTTGAAGGTGTTCATATTCAAACTCATGCTGTTCTTCGTCAATGTTGGATCGAACGTCTTTCACCTTGTCTTGTTCTTAATAAGATGGATAGGTTAATTACTGAGTTGAAACTTACTCCTTCTGAAGCTTATGCGCGTTTATTGAGAATTGTTCATGAGGTTAATGGTATTGTTAGTGCTTATAATTCGCAGAAATATTTATCTGATGTTGATTCTCTTCTTGCTGGTGGTACTGCTGCTGGTGGTGAAGTTATGGAGGATTATGATGATGTTGAAGATGTTTTTCAGCCTCAGAAAGGTAATGTTGTGTTTGCTTGTGCTTTAGATGGTTGGGGTTTTGGGATTCATGAATTTGCAGAGATTTATGCTTCAAAGCTTGGGGCTAGTGTTAGTGCATTACAGAAGGCTTTATGGGGTCCAAGATATTTTAATCCTAAAACTAAGATGATTGTAGGGAAGAAAGGGATTGGTGCTGGTAGTAAGGCTAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCTTTGTGGCAGGTTTATCAAGGGGCACTTGAAGGGGATAAAGGGTTGATTGAGAAGGTTATTAAGTCTTTTCATTTACAGGTTCCGGCGCGTGAGTTGCAGAATAAGGATTCTAAGGTTGTGCTTCAAGCTGTTATGAGCCGTTGGCTTCCTCTTTCGGATGCCATTTTGTCGATGGTGGTGAAGTGTATGCCAGATCCTATTGCAGCGCAGGGTTCTCGGATATCCCGGCTGATTCCGCAGCGTGAGGTTGGTTCTGGAGATGGGGTTGATAGGAAGGTAGTGGAAGAGGCGGAGCTTGTGAGGAAGTCGGTGGAAGGGTGTGATTGGAGGGATGAGGTTCCTTGTGTTGCATTTGTTGCGAAAATGTTTGCTCTTCCTGTTAGAATGCTTCCTCCTCCACAAGTAGGGGAGGTTGTGGGAAGTTTTGGTGAGGAAGGTGAGGGTGAATCTGATGAATGTTTTTTGGCATTTGCTAGGATATTTAGTGGTGTTTTGTCTGTTGGGCAGAGAGTTTTTGTGATTTCGGCTTTGTATGATCCTTTGAAAGCGGAATCGACGCTAAAGCATATACAGGAGGCTGAATTGAAATCCATATATCTGATGATGGGGCAAGGGTTGAAAGTAGTGAAATCTGCGAAAGCAGGAGATGTTGTTGCAATCCGAGGACTTGGCCAGTATATTTTGAAAAGTGCTACACTTTCTTCTACTAGGAACTGTTGGCCTTTTTCGAGTATGGCGTTTCAAGTTGCCCCAATTTTGAGGGTTGCTATTGAGCCATCTGACCCTGCAGATATGGGTGCACTGCTCAAAGGCTTGAGGCTTTTGAATCGAGCGGATCCATTTGTTGAGGTCACGGTTTCTGCAAGAGGAGAGCATGTTCTTGCTGCAGCTGGTGAAGTTCATCTTGAGAGATGCATAAAGGATTTGAAGGATAGGTTTGCAAAAGTAAGGTTGGAAGTCTCTCCACCCCTTGTGTCTTACAAAGAGACCATCGAGGGAGAGGTATCCAACATGCTAGAAAATTTGAAAGTTCTCAGCAAGAACTTAGATTATGTTGAGAAAATGACGCCCAATGGAAGATGCATTGTACGCGTGCAGGTGATGAAACTTTTACCTTCTCTCACAAAGGTTCTTGATGAAAGTGCTGATATACTTGGAGATATCATTGGAATAAAGTCGGGGCAGACGGTTAAAAGTTTAGAAACTCAGGGGACAAATATTCTCGAAAATGGGAATCCAGCTGAAGTGATTAAAAAACGTATAATGGATGCAATTGAGAGTGACATTTTGTGTAGGATTGAGAATGATGAAGACCATGCCGAGAAATGTAGATTGAAGTGGTTAAAGCTTTTGAGGAGGATATGGGCACTTGGTCCGAGTTACATCGGCGCTAACGTTCTCTTTACTCCTGATATTAAAGCAGAGAGTAGTGATAGCTCTGTTCTAATACGTGGTTCTTCTCAATTATCGGAAAAGTTGGGTTTTGTGGCTGATTCTGGTAACAGTAACCCGGTTTCAGAGGCATCTTCAAATGACAGCCAAGTGTTGTATATGGATGCCGAGCGTCTTGAGAGTAATGTTATAACCGGGTTCCAACTAGCAACTTCAGCCGGGCCTTTATGCGATGAACCTATGTGGGGTCTGGCATTTGTCATTGAGGCACGAATAACTCCATCTACAGGACATGATGAATCCGAAACACACCAACAATCCGACCAGTATGGCATATTTGCAGGGCAGGTTATTGCAACCGTTAAAGATGCTTGTAGGACAGCTGTGCTAAAGAATAAGCCAAGGCTTGTGGAAGCAATGTACTTTTGTGAATTGAATACCCCTACTGAATTTTTGGGTCCCATGTATGGTGTACTTTCCCGTAGACGGGCTCGAATTTTGAAAGAAGAGATGCAGGAAGGTTCCCCTTTATTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTACTGATGAGCTTAGAAGTAGGACTTCTGGCGCTGCGAGTGCAATTCTCGTCCTTAGCCATTGGGAAGCACTACTCGAGGATCCTTTCTTTGTACCTAAAACAGAAGAGGAAATCGAAGAGTTTGGAGATGGTTCCAGCGTTCTTCCAAATACAGCAAGAAAGTTGATTGACACAGTCAGACGGCGGAAGGGCCTTCATGTCGAGGAAAAGGTAGTACAACACGGAACAAAGCAGAGGACACTTGCTCGGAAAGTTTGA 3078 0.4396 MEESASDNDRHKIRNICILAHVDHGKTTLADQLIATAGGGMVHPKVAGKLRFMDFLDEEQRRAITMKSSSISLHYNHHTINLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKMDRLITELKLTPSEAYARLLRIVHEVNGIVSAYNSQKYLSDVDSLLAGGTAAGGEVMEDYDDVEDVFQPQKGNVVFACALDGWGFGIHEFAEIYASKLGASVSALQKALWGPRYFNPKTKMIVGKKGIGAGSKAKPMFVQFVLEPLWQVYQGALEGDKGLIEKVIKSFHLQVPARELQNKDSKVVLQAVMSRWLPLSDAILSMVVKCMPDPIAAQGSRISRLIPQREVGSGDGVDRKVVEEAELVRKSVEGCDWRDEVPCVAFVAKMFALPVRMLPPPQVGEVVGSFGEEGEGESDECFLAFARIFSGVLSVGQRVFVISALYDPLKAESTLKHIQEAELKSIYLMMGQGLKVVKSAKAGDVVAIRGLGQYILKSATLSSTRNCWPFSSMAFQVAPILRVAIEPSDPADMGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKDRFAKVRLEVSPPLVSYKETIEGEVSNMLENLKVLSKNLDYVEKMTPNGRCIVRVQVMKLLPSLTKVLDESADILGDIIGIKSGQTVKSLETQGTNILENGNPAEVIKKRIMDAIESDILCRIENDEDHAEKCRLKWLKLLRRIWALGPSYIGANVLFTPDIKAESSDSSVLIRGSSQLSEKLGFVADSGNSNPVSEASSNDSQVLYMDAERLESNVITGFQLATSAGPLCDEPMWGLAFVIEARITPSTGHDESETHQQSDQYGIFAGQVIATVKDACRTAVLKNKPRLVEAMYFCELNTPTEFLGPMYGVLSRRRARILKEEMQEGSPLFTVHAYVPVSESFGFTDELRSRTSGAASAILVLSHWEALLEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDTVRRRKGLHVEEKVVQHGTKQRTLARKV 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04624 1025 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 11 241 IPR000795 GO:0003924|GO:0005525
Trre16g04624 1025 CDD EF2_II 398 520 - -
Trre16g04624 1025 SUPERFAMILY Ribosomal protein S5 domain 2-like 609 885 IPR020568 -
Trre16g04624 1025 Coils Coil 612 632 - -
Trre16g04624 1025 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 7 1024 - -
Trre16g04624 1025 CDD aeEF2_snRNP_like_IV 606 890 - -
Trre16g04624 1025 PRINTS GTP-binding elongation factor signature 97 108 IPR000795 GO:0003924|GO:0005525
Trre16g04624 1025 PRINTS GTP-binding elongation factor signature 133 142 IPR000795 GO:0003924|GO:0005525
Trre16g04624 1025 PRINTS GTP-binding elongation factor signature 81 91 IPR000795 GO:0003924|GO:0005525
Trre16g04624 1025 PRINTS GTP-binding elongation factor signature 15 28 IPR000795 GO:0003924|GO:0005525
Trre16g04624 1025 PRINTS GTP-binding elongation factor signature 61 69 IPR000795 GO:0003924|GO:0005525
Trre16g04624 1025 FunFam Elongation factor like GTPase 1 882 1017 - -
Trre16g04624 1025 SUPERFAMILY EF-G C-terminal domain-like 886 984 IPR035647 -
Trre16g04624 1025 Gene3D Yeast translation eEF2 (G' domain) 226 333 - -
Trre16g04624 1025 Gene3D Elongation Factor G (Translational Gtpase), domain 3 534 610 - -
Trre16g04624 1025 SUPERFAMILY EF-G C-terminal domain-like 533 607 IPR035647 -
Trre16g04624 1025 SUPERFAMILY Translation proteins 391 529 IPR009000 -
Trre16g04624 1025 Gene3D Translation factors 350 532 - -
Trre16g04624 1025 Pfam Elongation factor Tu GTP binding domain 12 343 IPR000795 GO:0003924|GO:0005525
Trre16g04624 1025 Pfam Elongation factor G C-terminus 884 964 IPR000640 -
Trre16g04624 1025 FunFam Translation elongation factor 2 534 610 - -
Trre16g04624 1025 Pfam Elongation factor Tu domain 2 439 517 IPR004161 GO:0005525
Trre16g04624 1025 CDD eEF2_snRNP_like_C 886 964 - -
Trre16g04624 1025 CDD EF2_snRNP_III 535 606 - -
Trre16g04624 1025 Gene3D - 631 880 IPR014721 -
Trre16g04624 1025 Gene3D - 882 1016 - -
Trre16g04624 1025 CDD EF2 14 234 - -
Trre16g04624 1025 FunFam Elongation factor 2-like protein 4 214 - -
Trre16g04624 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 348 IPR027417 -
Trre16g04624 1025 Gene3D - 4 208 IPR027417 -
Trre16g04624 1025 SMART EFG_C_a 883 972 IPR000640 -
Trre16g04624 1025 FunFam Elongation factor like GTPase 1 226 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04624 Trre-Chr16 50746856 50749933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04624 7 1025 Eukaryotic Initiation Factors Gene Family AT3G22980 69.193 0.0 1438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04624 K14536 - pvu:PHAVU_003G003900g 1644.4