Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04623 ATGGAACGGTACGGCCGAGCAAACGAAGGGTCCAACTCTGATCCGACGCCGGAATGGACTGTCGCCGGTGGAGATACGTCTCATCAAGGGTATGGATTGGTTGGTGGTGAATCGTATCCTCAAAGACCAGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCGAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCAGGGGAATATCCCGAACGAGTTGGACAGCCGGTTTGCCAGTATTATATAAGGACTGGATCGTGCAAATTTGGTGCATCCTGCAAGTATCATCATCCTAGACAGGCAGCTGGCACTACTGCCCCTGTGTCGCTAAATTATTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGCGAAAACCGGACAGTGCAAGTTTGGTGCAACCTGTAAATTCCATCATCCCCAGCCTGCAGGTGTCCAAATGATAGCACCACCGCCGGTTCCCCAAGTTTCACCTCTTCCTATGCCGGTACCTTCACCAATGTATCAAACTGTACAGCCTCCATCAGGTCCTTCACAACAACAGTATGGTGTACTTGTTGCGAGGCCACCTTTGCTGCATGGCTCATTTGTCCAGGGTCCTTATGGGCCTATGGTAGTGTCCCCCACCATGGTCCCCTTTTCAGGATGGAGTCCTTATCAGGCTCCAGCAGCAAGTCCCGTACTTCCTTCTAGTAATCCGTTGAGTGGCGGTTCGACACAAATTTATGGGATGACCCAGCTGCCTTCGCCAACTACTGCGTATACCGGACATTACCAATCTTCTGGTTCCTTAACCGGTCCATCAGGCAGTAGTCAGAAGGAAAACTCATTACCTGAAAGACCTGATCAACAGGAGTGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTTCTTCATGTAGATATCATCATCCGCGAGACATGGGTGCACCAAAAGTGAACTTTAGTCCCATTGGTCTTCCTTTACGCCCGGGGGCACAACCTTGCACTCATTATACACAGCGCGGAATTTGTAAGTTTGGATCTGCATGCAAATTTGATCATCCTATGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCTCTAGCTGATATGCCAGTCGCACCCTATCCCGTGGGTTCTTCCATTGGTACTCTTGCTCCATCATCGTCATCATCCGAGTTGAGGCCTGAACTTGCCTCAGGATCCAGCAAGGAGTCCGCTTCATCCAGAATGTCTTCATCAATGAGCACATCGACTGCATCAGTTGGCTTGACTTCGTCAACTGTCGCACCGATTTCTCAATCAAGTACCCAGCCGCCATCTGCTCAGAGTTCCAGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1437 0.4941 MERYGRANEGSNSDPTPEWTVAGGDTSHQGYGLVGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYIRTGSCKFGASCKYHHPRQAAGTTAPVSLNYYGYPLRVGEKECSYYAKTGQCKFGATCKFHHPQPAGVQMIAPPPVPQVSPLPMPVPSPMYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVVSPTMVPFSGWSPYQAPAASPVLPSSNPLSGGSTQIYGMTQLPSPTTAYTGHYQSSGSLTGPSGSSQKENSLPERPDQQECHHYMKTGECKFGSSCRYHHPRDMGAPKVNFSPIGLPLRPGAQPCTHYTQRGICKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSSKESASSRMSSSMSTSTASVGLTSSTVAPISQSSTQPPSAQSSSSLATPSATTSSTVSHTSS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04623 478 MobiDBLite consensus disorder prediction 271 300 - -
Trre16g04623 478 MobiDBLite consensus disorder prediction 9 23 - -
Trre16g04623 478 Gene3D - 297 381 - -
Trre16g04623 478 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Trre16g04623 478 PANTHER PROTEIN PHOSPHATASE RELATED 35 405 - -
Trre16g04623 478 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Trre16g04623 478 SUPERFAMILY CCCH zinc finger 44 70 IPR036855 GO:0046872
Trre16g04623 478 MobiDBLite consensus disorder prediction 271 296 - -
Trre16g04623 478 MobiDBLite consensus disorder prediction 399 478 - -
Trre16g04623 478 FunFam Zinc finger nuclease 2 41 118 - -
Trre16g04623 478 SUPERFAMILY CCCH zinc finger 134 161 IPR036855 GO:0046872
Trre16g04623 478 MobiDBLite consensus disorder prediction 1 38 - -
Trre16g04623 478 SUPERFAMILY CCCH zinc finger 346 373 IPR036855 GO:0046872
Trre16g04623 478 SUPERFAMILY CCCH zinc finger 90 115 IPR036855 GO:0046872
Trre16g04623 478 ProSiteProfiles Zinc finger C3H1-type profile. 87 115 IPR000571 GO:0046872
Trre16g04623 478 SMART c3hfinal6 87 114 IPR000571 GO:0046872
Trre16g04623 478 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Trre16g04623 478 SMART c3hfinal6 343 370 IPR000571 GO:0046872
Trre16g04623 478 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Trre16g04623 478 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Trre16g04623 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 326 IPR000571 GO:0046872
Trre16g04623 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 69 IPR000571 GO:0046872
Trre16g04623 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 90 114 IPR000571 GO:0046872
Trre16g04623 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 347 370 IPR000571 GO:0046872
Trre16g04623 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 160 IPR000571 GO:0046872
Trre16g04623 478 Gene3D - 37 114 - -
Trre16g04623 478 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Trre16g04623 478 Gene3D - 115 170 - -
Trre16g04623 478 ProSiteProfiles Zinc finger C3H1-type profile. 343 371 IPR000571 GO:0046872
Trre16g04623 478 SUPERFAMILY CCCH zinc finger 301 327 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04623 Trre-Chr16 50732973 50736409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04623 1 445 C2H2 Transcription Factor Family AT5G18550 55.172 1.25e-148 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre16g04623 zf-CCCH 1.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04623 - - mtr:11409008 753.436