Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04622 ATGTCCACCTCTAAAAAAACAACATCAGATTCATCTTTCAAAGGATATCATGAAACAAATCAAACACAAATGTGTCTATCATCACTAATCCTTCAAAGGAACAATAACACATTACCTAATGGTGAAAAAAGAGGAAGAAGAAAACAAACAGAACCAGGAAGATTTCTTGGTGTTAGAAGAAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACTAAAGAAAGACATTGGCTAGGTACTTTTGATACTGCTCAAGAAGCTGCTCTTGCTTATGATAGAGCTGCTATTTCCATGAAAGGAAATCAAGCTAGAACAAATTTCATTTACTCTGATACTATCAATTTTCATACACTTGTTTCTTCTCCTTTAGATCTTCAAGTTCAAGTTCAACAAACTCTTTTGACACCTTCAACACAAAACAATCAAAATAGTACACTTTTTCAGCTTAACACTCCACACAACACTACTAGTAGAAATGATCAAAATTCTTCCTTGATGAGTACTTTTGATCATGATGAAAAAACAAAAAATGAATCATCAACTCATCATGATGAAATTTATTTTTTTACTAATGAGACTAAAAATAACTCTGGCTATCTTGAATGCATAGTTCCTGATAACTGTTTGAGAAACAGCAATGTTAATTTTAGTGCTTCAAGTGATGAAAAAGTTGGCAACAATGTTGAAAGTAACAAATTTTTCATGGAGGGTGAATCACATTTTGGTATGGCTTCATTCTCTCAAGAAATGCCAACAAGGGTCTCTAGCTTTTCAGAGTTTTCTTGTTATCCAAGTGAAATTAGTCAAGGTTTCTTGGATTGGAATTCTAATGAACTTTCAGCTATATTTAACAACAATCCATTAAGAGTTGAAGATGAATGCATGGATACATTGTATCCTAATTATCCCATCATTGAAAATCTAAGTCCAAGCTATGTTATGATGAATGATCAATCTGCTTCTTCAACTAACTATTCTCCATCACTTGAATTTGGTTACCCTCTCTTTTGA 1020 0.3314 MSTSKKTTSDSSFKGYHETNQTQMCLSSLILQRNNNTLPNGEKRGRRKQTEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAAISMKGNQARTNFIYSDTINFHTLVSSPLDLQVQVQQTLLTPSTQNNQNSTLFQLNTPHNTTSRNDQNSSLMSTFDHDEKTKNESSTHHDEIYFFTNETKNNSGYLECIVPDNCLRNSNVNFSASSDEKVGNNVESNKFFMEGESHFGMASFSQEMPTRVSSFSEFSCYPSEISQGFLDWNSNELSAIFNNNPLRVEDECMDTLYPNYPIIENLSPSYVMMNDQSASSTNYSPSLEFGYPLF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04622 339 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Trre16g04622 339 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Trre16g04622 339 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Trre16g04622 339 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Trre16g04622 339 MobiDBLite consensus disorder prediction 142 180 - -
Trre16g04622 339 MobiDBLite consensus disorder prediction 142 169 - -
Trre16g04622 339 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 220 - -
Trre16g04622 339 Pfam AP2 domain 57 103 IPR001471 GO:0003700|GO:0006355
Trre16g04622 339 FunFam Ethylene-responsive transcription factor 2 54 112 - -
Trre16g04622 339 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Trre16g04622 339 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Trre16g04622 339 CDD AP2 54 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04622 Trre-Chr16 50727529 50728548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04622 1 213 AP2-EREBP Transcription Factor Family AT5G18560 46.640 3.07e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre16g04622 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04622 - - cam:101500468 404.831