Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04615 ATGTCAACTTTCAAAAACTTTCTACCCTCTCCAAATTGTGAGAGATATGTTTTTCAACTCTTTGACAGGTATCTGCAAAACAACAAGTGTATAAAGTTAAATCAGCTAACAATAAATTCTGGAGGGGTTGCTTCCTTTGCCCTTTTCAATGTCCATGGGAGTGATGATGCATCTGTAAAAGAAGCAGCAGCTGTCATAAAGTTATCTTCATCGAGAATGGCAACACAGTCCGAATGTCTCGGATATGAATTTGCCAAGTGGTTGGGAGTCCAAACGCCACAGGCTAGAGTCATTCACAATACCAGTTCAGAATGGCTCCAAATAAAAGAAGCTGCAGAAAAAGCAAGGGATGCAGCAAGTTTTGAGGGTGATGCAATTGGTGAAACAACATGTTCAGAGCTTTTGGAAGCACTTGAGCTTAGTCGGTGTCTCTTGTGTATGAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGTTATCAATCTTGGGAGATAAAATGAACATGTTTAGTAGGATGATAGAAGGGTTGATTTGGTCTCCACAAAGCAACAACGGTATTAGCCGAGCTGATGATTGGGCTTTTGAGGAGGAATTTGATAAGCAAGTTCCACTGATGGATGAGATTGATACAAAGGTGAGATTCATCAATTTCTTCCTGTAA 669 0.4081 MSTFKNFLPSPNCERYVFQLFDRYLQNNKCIKLNQLTINSGGVASFALFNVHGSDDASVKEAAAVIKLSSSRMATQSECLGYEFAKWLGVQTPQARVIHNTSSEWLQIKEAAEKARDAASFEGDAIGETTCSELLEALELSRCLLCMRMDEMMRGQRGWRELSILGDKMNMFSRMIEGLIWSPQSNNGISRADDWAFEEEFDKQVPLMDEIDTKVRFINFFL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04615 222 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 33 148 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trre16g04615 222 Pfam Actin-fragmin kinase, catalytic 31 166 IPR015275 -
Trre16g04615 222 SUPERFAMILY Protein kinase-like (PK-like) 33 149 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04615 Trre-Chr16 50672921 50675232 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04615 35 147 Protein tyrosine phosphatase (PTP) family AT5G23720 71.681 9.31e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04615 K14165 - jre:109000311 166.777