Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04609 ATGGGTTGTTTTCCTTGTTTTGTATCTTTCAACAAAGAAGATTCCCACGTTCACTCTAGAAGGATTACCTCAGAAAAATCCAAATTGCTGAGTGCCTCAAGTCCTAACACCAAAGATGAGTCAGAAGGAAGTGTTCGTGCACATACATTTACATTACAAGAGCTTAAAGCTGCTACCAATAATTTTTCACCGGAATGTTTATTAGGTGAAGGGGGCTTTGGGCCTGTATACAAAGGTCGTCTTGAGAATCTTAAGAATAAAGCAGTTGCTGTGAAACAGCTTAAGCAGAAAAGTTGTCAAGGTGATCGAGAATTTTTGGTGGAGGTTCTCATGCTAAACCTATTAAATCACAAAAATCTTGTGAACTTGGTTGGTTATTGTGCTGATGGAGATCAACGGCTACTTGTTTACGAGTATATGGCATTGGGGTCTTTAGACAAGCATTTACATGATCTTCCTCCTCGCGCAAAGCCACTAGATTGGAACACAAGGATGAAAATAGCATTGGCAACAGCAAAAGGATTGAAGTATATGCATAAGGCAAATCCCCCTGTAATATATAGAGACTTAAAATCATCCAACATCCTCTTAGATGAAAATTATCAAGCCAAGTTATCAGATTTTGGGTTGGCAAAACTTGGACCAAGTGGTGATATGTCTCATGTAACCACTAGAGTAATGGGAACATATGGTTATTGTGCCCCTGAATATTTTATGACTGGACAACTAACTATGAAGTCTGATGTGTATAGTTATGGCGTACTCTTGCTCGAACTTATTTCAGGACGCAGAGCTATCGATGATACACGTCCACAAGCAGAGCGAAGTCTTGTTGTTTGGGCAAAAACTCATTTTAAAAACCGTAGGAACTTTATCAAATTGGTTGACCCTCAACTTCAAGGTCGTTTTCCAATAGAAGGACTTTATCAAGCAGTTGCTATTGCAGCAATGTGTGTGCATACACAAGCTTCAGAAAGGCCTCACATTGGTGATATTGTGGATAGTCTTACATACATGACAAGAAGTGACACATCACCCCAATTGAGAAGAAGTTTGATGACTAAGTGA 1068 0.3933 MGCFPCFVSFNKEDSHVHSRRITSEKSKLLSASSPNTKDESEGSVRAHTFTLQELKAATNNFSPECLLGEGGFGPVYKGRLENLKNKAVAVKQLKQKSCQGDREFLVEVLMLNLLNHKNLVNLVGYCADGDQRLLVYEYMALGSLDKHLHDLPPRAKPLDWNTRMKIALATAKGLKYMHKANPPVIYRDLKSSNILLDENYQAKLSDFGLAKLGPSGDMSHVTTRVMGTYGYCAPEYFMTGQLTMKSDVYSYGVLLLELISGRRAIDDTRPQAERSLVVWAKTHFKNRRNFIKLVDPQLQGRFPIEGLYQAVAIAAMCVHTQASERPHIGDIVDSLTYMTRSDTSPQLRRSLMTK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04609 355 SMART serkin_6 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04609 355 Pfam Protein tyrosine and serine/threonine kinase 67 336 IPR001245 GO:0004672|GO:0006468
Trre16g04609 355 CDD STKc_IRAK 68 337 - -
Trre16g04609 355 FunFam Serine/threonine-protein kinase PBS1 140 353 - -
Trre16g04609 355 ProSiteProfiles Protein kinase domain profile. 62 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04609 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Trre16g04609 355 Gene3D Transferase(Phosphotransferase) domain 1 140 351 - -
Trre16g04609 355 FunFam Serine/threonine-protein kinase CDL1-like 33 139 - -
Trre16g04609 355 PANTHER OS07G0668900 PROTEIN 3 344 - -
Trre16g04609 355 Gene3D Phosphorylase Kinase; domain 1 32 139 - -
Trre16g04609 355 MobiDBLite consensus disorder prediction 26 40 - -
Trre16g04609 355 SUPERFAMILY Protein kinase-like (PK-like) 37 337 IPR011009 -
Trre16g04609 355 MobiDBLite consensus disorder prediction 24 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04609 Trre-Chr16 50612406 50615756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04609 1 339 Glycoside Hydrolase AT3G07070 56.303 3.30e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre16g04609 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04609 - K13430 mtr:25494065 544.273