Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04608 ATGGCAAGAACTTCCAAATCTCAGGTTTCAAGCGCCTCCAATTCATCTTCCTCATCTGAAGAAGAAGAGGTCGAGAACGTTAACGACCAGATCGAAGATGACGAAGACGAACTCGAAGCCGTTGCTCGTTCCGCTGGTTCCGATGACGACGATGACAATGTTCCTGACGAAGCTGCCGAAGTTGACGAAGACGCCGATGACGGCGAAGATGATAATCAGGATGAAAGTAATGTTAATCCTGAGATAAGTAAGCGCGAGAAAGCGAGATTGAAAGAATTAGAGAGGTTGAAGAAACAGAAGATTCAGGAGATATTGGATGCACAAAATGCAACTATTGATGCTTCTATGAACACTAAAGGAAAAGGACGATTGAAGTATCTACTGCAGCAAACTGAGCTCTTTGCTCATTTTGCAAAAAGTGAACAATCTTCATCTCAGAAGAAGACTAAGGGAAGAGGACGCCATGCTTCAAAAGTGACCGAGGAAGAGGAAGATGAAGAATACCTCAAAGAAGAAGAAGGTGGTTTAGGAAATACACGGCTGGTTACTCAACCGTCATGCATCCAAGGGAAAATGAGGGATTACCAACTTGCTGGGCTAAATTGGCTCATACGTTTGTATGAAAATGGAATAAACGGAATTTTAGCAGATGAAATGGGTCTTGGCAAAACTTTACAAACTATATCTTTGTTGGGCTATTTACATGAGTTCAGAGGAATAACGGGTCCGCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTCTGTCCTACTTTAAGGGCAATTAAGTTCCTTGGTAGCCCTGATGAAAGGAAACACATAAGAGAGGACTTATTGGTTGCTGGAAAGTTTGATGTGTGCGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGACTACATTGCGTCGATTTAGTTGGCGTTATGTTATTATCGATGAAGCCCACCGGATCAAGAATGAGAACTCCCTCCTGTCCAAAACAATGAGGTTATATAATACAAACTACCGACTCCTTATAACTGGCACACCGCTACAGAACAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAACTTCACAAGGTCCTCCGTCCATTTCTTCTTCGAAGATTAAAATCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAAGTAGGCATGTCCCAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTGAATGCCGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTTCGTAAATGTTGCAATCACCCATATCTTTTCCAAGGGGCTGAACCTGGTCCTCCCTACACAACAGGGGATCATCTCATTACAAATGCTGGCAAAATGGTTCTAATGGATAAATTACTTCCCAAACTAAAAGAGCGGGATTCTAGGGTCCTAATATTTTCACAGATGACTAGACTGCTAGACATACTTGAAGATTATTTGATGTTTCGTGGATACCAATATTGTCGCATAGATGGTAATACTGGTGGAGATGACCGTGATGCGTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGTCTCGGCATCAATCTTGCTACTGCTGATGTTGTTATTCTTTATGATAGTGACTGGAATCCACAAGCTGACTTGCAAGCTCAAGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCAGATTCTGCACCGAGTATACGATCGAGGAAAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGTCTGTTAATAAAGATGATTTGCTTCAAATGGTTAGATTCGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAAGATATTGACAGAATTATTGCCAAAGGAGAGGAATCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCAATCAAATTTAAGATGGATGACACTGCTGATTTGCTTGACTTCGATGATGAGAAAGATGAGAACAAAGTTGATTTCAAAAAAATTGTGAGTGACAACTGGGTTGAGCCATCAAGAAGAGAACGGAAGAGAAATTACTCAGAGTCTGAATACTTCAAACAAACAATGCGCCAAGCTGCTCCTACTAAACCAAAAGAACCCCGGATTCCTAGGATGCCTCAATTGCATGATTTTCAGTTCTTCAACACTCACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGATATCTAATGCAAGCACATCAGAAGAATCAGGTAAAAGATTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGAGCCATTGACTGCAGAAGAGGCTGAAGAAAAGGATCAACTGCTCGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATACTTTCACTAGGGCATGTGAAAAATATGGCCGAAATGATATTAAAAGTATTGCCTCTGAGATGGAAGGAAAGACAGAGGAAGAAGTAGAAAGATATGCAGAAGTTTTCAAAGAGCGATACAAGGAGTTGAATGATTATGATAGAATTATAAAAAACATTGAAAGAGGTGAGTCGAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGCTACAAGAATCCTTGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAATTATACAATGAAGAATGTGATCGATTCATGATATGCATGACTCACAAACTTGGCTATGGAAATTGGGATGAATTGAAGGCGGCATTTCGAATGTCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCACGCACAACTCAGGAACTAACAAGGAGATGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAAAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCACTAAGAGTTCGACTCCATCAAAGCGCACCATGCCAAGACAGGCAGAGAGTCCATCTCTGAAGAAGCGGAAGCAATTAACAATGGATCACTATGTAAGCTCGGGGAAGAGAAAAAAGTAA 3204 0.4092 MARTSKSQVSSASNSSSSSEEEEVENVNDQIEDDEDELEAVARSAGSDDDDDNVPDEAAEVDEDADDGEDDNQDESNVNPEISKREKARLKELERLKKQKIQEILDAQNATIDASMNTKGKGRLKYLLQQTELFAHFAKSEQSSSQKKTKGRGRHASKVTEEEEDEEYLKEEEGGLGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPTLRAIKFLGSPDERKHIREDLLVAGKFDVCVTSFEMVIKEKTTLRRFSWRYVIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLMDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQADLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKSVNKDDLLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEESTAELDAKMKKFTEDAIKFKMDDTADLLDFDDEKDENKVDFKKIVSDNWVEPSRRERKRNYSESEYFKQTMRQAAPTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQAHQKNQVKDSIDVDEPEEVGEPLTAEEAEEKDQLLEEGFSSWSRKDFNTFTRACEKYGRNDIKSIASEMEGKTEEEVERYAEVFKERYKELNDYDRIIKNIERGESRIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMTHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEYDERERQARKEKKLATKSSTPSKRTMPRQAESPSLKKRKQLTMDHYVSSGKRKK 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04608 1067 Gene3D - 843 897 - -
Trre16g04608 1067 Coils Coil 993 1027 - -
Trre16g04608 1067 Gene3D - 931 1035 - -
Trre16g04608 1067 Pfam Helicase conserved C-terminal domain 497 607 IPR001650 -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 50 76 - -
Trre16g04608 1067 Gene3D - 193 408 IPR038718 -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 1014 1031 - -
Trre16g04608 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 689 IPR027417 -
Trre16g04608 1067 Pfam SLIDE 900 1010 IPR015195 GO:0003677|GO:0005634|GO:0006338
Trre16g04608 1067 CDD SF2_C_SNF 493 618 - -
Trre16g04608 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 843 897 - -
Trre16g04608 1067 Coils Coil 17 44 - -
Trre16g04608 1067 Gene3D iswi atpase 898 930 - -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 1 87 - -
Trre16g04608 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 931 1035 - -
Trre16g04608 1067 Gene3D ISWI, HAND domain 744 842 IPR036306 GO:0003677|GO:0006338|GO:0031491
Trre16g04608 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 407 IPR027417 -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 813 835 - -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 1014 1067 - -
Trre16g04608 1067 SUPERFAMILY Homeodomain-like 846 896 IPR009057 -
Trre16g04608 1067 SMART sant 843 892 IPR001005 -
Trre16g04608 1067 ProSiteProfiles SANT domain profile. 842 894 IPR017884 -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 22 39 - -
Trre16g04608 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 413 705 - -
Trre16g04608 1067 Pfam SNF2-related domain 205 472 IPR000330 GO:0005524|GO:0140658
Trre16g04608 1067 SMART ultradead3 188 380 IPR014001 -
Trre16g04608 1067 Gene3D - 413 705 IPR027417 -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 138 172 - -
Trre16g04608 1067 Coils Coil 83 110 - -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 1043 1061 - -
Trre16g04608 1067 Pfam HAND 756 838 IPR015194 GO:0003677|GO:0006338|GO:0031491
Trre16g04608 1067 SUPERFAMILY Homeodomain-like 898 1020 IPR009057 -
Trre16g04608 1067 MobiDBLite consensus disorder prediction 1 21 - -
Trre16g04608 1067 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 74 1052 - -
Trre16g04608 1067 SMART helicmild6 523 607 IPR001650 -
Trre16g04608 1067 FunFam ISWI chromatin-remodeling complex ATPase CHR11 744 842 - -
Trre16g04608 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 648 IPR001650 -
Trre16g04608 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 369 IPR014001 -
Trre16g04608 1067 CDD SANT 846 890 IPR001005 -
Trre16g04608 1067 CDD DEXHc_SMARCA1_SMARCA5 189 409 IPR044754 GO:0005524
Trre16g04608 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 755 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Trre16g04608 1067 FunFam Chromatin-remodeling complex ATPase 193 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04608 Trre-Chr16 50594071 50603258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04608 213 634 RAD5 or RAD16-like Gene Family AT1G02670 26.733 3.74e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre16g04608 SNF2_N 7.6e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04608 K11654 - gmx:100791510 1847.79