Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04605 ATGGAAGGTTACACCAACAAGAATATTGATCCTTCACATTCTGAAATGGGTAACAGAAAACGTGGTAGAGAATTAGGTGCTACCACTACAACAAAAAGCGAAGAAACTCTTAACACAGAACGTGAAAGAAGGAAGAAAATGACTCAAATGTTCACTCACCTTAATAACACTGTCCCTACTCTTCGTCCCAATGCTACAAAGGAAGTGATTATAACAGAAACAATTGAGTACATTAAGGAACTTGAAAAGAAGAAGAAAATGTTGGAGGAGATGAAGGAATCAATGAAGTTACCGATTGAAGGAAGTTTGTTGATTCCGTGTCGTAATAGGAATTGCTGCTCTGTATCTGTTACTGTTTCTAGCAATGTGGGTTTTTTTGGAATTGAATCAGTGGCTAAACCTGGTTTGATTACTCTGATTTTGAAGGTGTTTTTCAACAACCATGCTGAGATTTTAGCTGTTAATGTTTCTGTTAATGATGGGAATCTCATCTTGGCGATCACAGCTTTGGTTCAAAATAGTGCTACTATTGAGAAGATTAAGAGAGAGATTATGAGTTTGTAG 564 0.367 MEGYTNKNIDPSHSEMGNRKRGRELGATTTTKSEETLNTERERRKKMTQMFTHLNNTVPTLRPNATKEVIITETIEYIKELEKKKKMLEEMKESMKLPIEGSLLIPCRNRNCCSVSVTVSSNVGFFGIESVAKPGLITLILKVFFNNHAEILAVNVSVNDGNLILAITALVQNSATIEKIKREIMSL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04605 187 Coils Coil 71 91 - -
Trre16g04605 187 Pfam Helix-loop-helix DNA-binding domain 39 82 IPR011598 GO:0046983
Trre16g04605 187 CDD bHLH_SF 40 78 - -
Trre16g04605 187 SMART finulus 37 87 IPR011598 GO:0046983
Trre16g04605 187 MobiDBLite consensus disorder prediction 1 42 - -
Trre16g04605 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 81 IPR011598 GO:0046983
Trre16g04605 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 99 IPR036638 GO:0046983
Trre16g04605 187 MobiDBLite consensus disorder prediction 13 28 - -
Trre16g04605 187 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 15 95 IPR044278 GO:0003700|GO:0006355|GO:0009960
Trre16g04605 187 Gene3D - 27 102 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04605 Trre-Chr16 50580839 50581532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04605 39 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 48.148 1.18e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g04605 HLH 7.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04605 - - psat:127073348 180.644