Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04600 ATGGGGTGTGTGTTTGGGAAAGAGGGTTCAAAGAGGAAGAAAGAGGTGGTGAATGTTGCTAAGGTGGAAGAGGTTGAACTTGAGTGTGAGGTTCAAAATGGTGTGAATGAGAAAGAGGGTGAAGAGGATGAGAAAAGGAGGAGACAAAGGGCAAGGAGGGAGAGGAGGAGGCAATCTTTGAAGGCTAATCCAAGGCTGAGCAATCCACCTAACAATATACATGGTGAGCAGGTGGCTGCAGGGTGGCCCTCTTGGCTTTCCAAGGTTGCTGGTGAAGCTATACATGGATTGACGCCTCGAAGGGCGGATAGTTTTCATAAGCTTGATAAGATTGGACAAGGTACATATAGCAATGTTTATAAAGCTAAGGATACTTTAACTGGGAAAATTGTTGCATTAAAGAAGGTTCGTTTTGACAATTTAGAGCCAGAGAGTGTGAAATTCATGGCCAGGGAAATTTTGATTCTGCGTCGTTTGGATCATCCCAATGTTGTCAAACTAGAAGGTTTAGTGACTTCTAGGATGTCATGTAGTTTGTATCTTGTCTTTCAATACATGGAGCATGATTTGGCTGGACTTTCTACAAGCCCGGCAATTAAGTTTACAGTGTCTCAGGTTAAATGTTACATGCATCAGCTATTTTCTGGATTGGAACACTGTCACAACCGTAATGTGCTGCATCGTGACCTAAAGGGATCAAATCTTCTTATTGACAATGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTAATCACAAACAGCCTATGACTAGTAGGGTGGTTACTTTATGGTATCGATCTCCCGAACTTCTTCTTGGAGCCACTGATTATGATGTAGGAGTGGACCTGTGGAGTGCTGGCTGTATTATTGCTGAATTGTTGGCTGGAAGGCCTATTATGCCCGGCCGAACAGAGGTGGAACAACTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGATGAATATTGGAAAAAGGCAAAGCTACCGCATGCTACAATTTTTAAGCCGCAACAATCATATAAGCGATGCATAGCAAATAAATTTGAAGATTTCCCACCATCATCATTGCCACTAATTGAAACCCTTCTAGCAATCGATCCAGATGAACGTCAAACTGCCACTGCTGCATTACACAGTGAATTCTTTATGACACAGCCTTATGCTTGTGATCCCTCTAACCTTCCAAAATATCCTCCCAGTAAGGAGATGGATACAAAACTTCGGGATGAAGAAGCTAGAAGATTAAGAGCCGCGGGCAAAGGTAATGCTGTTGGCACTAAGAAATCGCGTTCACGTGATCGAAGTGGGAGGGGAATTCCAGTTCCAGAGGTCAATGCTGAGCTGCAAGCAAATATTGATAAATGGAGACTGGTAACGCGTGCAAATGCGAAGAGCAAGAGTGAGAAATTTCCTCCTCCTCACCAAGATGGAACTTTAGGCTATCCTTTGAGTTCATATCACATGGATCCAGTTTTTGATCCTCCTGACGTTCCATTTAGTTCCATAGATTTCTCATATACTAAAGCAGGTATTCAGACCTGGTCCGGCCCATTGATGGAACCGAGGATGAGTGCACCAAGGAGAAAAAAGAACAAGGCAGGCTTCAAGAAGGACCTGAATAGATAG 1647 0.4299 MGCVFGKEGSKRKKEVVNVAKVEEVELECEVQNGVNEKEGEEDEKRRRQRARRERRRQSLKANPRLSNPPNNIHGEQVAAGWPSWLSKVAGEAIHGLTPRRADSFHKLDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFQYMEHDLAGLSTSPAIKFTVSQVKCYMHQLFSGLEHCHNRNVLHRDLKGSNLLIDNEGILRIADFGLASFFDPNHKQPMTSRVVTLWYRSPELLLGATDYDVGVDLWSAGCIIAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYWKKAKLPHATIFKPQQSYKRCIANKFEDFPPSSLPLIETLLAIDPDERQTATAALHSEFFMTQPYACDPSNLPKYPPSKEMDTKLRDEEARRLRAAGKGNAVGTKKSRSRDRSGRGIPVPEVNAELQANIDKWRLVTRANAKSKSEKFPPPHQDGTLGYPLSSYHMDPVFDPPDVPFSSIDFSYTKAGIQTWSGPLMEPRMSAPRRKKNKAGFKKDLNR 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04600 548 Gene3D Transferase(Phosphotransferase) domain 1 188 427 - -
Trre16g04600 548 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04600 548 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04600 548 SUPERFAMILY Protein kinase-like (PK-like) 99 395 IPR011009 -
Trre16g04600 548 CDD STKc_CDK9_like 105 389 - -
Trre16g04600 548 SMART serkin_6 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g04600 548 FunFam probable serine/threonine-protein kinase At1g54610 188 429 - -
Trre16g04600 548 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Trre16g04600 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Trre16g04600 548 MobiDBLite consensus disorder prediction 425 447 - -
Trre16g04600 548 Gene3D Phosphorylase Kinase; domain 1 93 187 - -
Trre16g04600 548 FunFam probable serine/threonine-protein kinase At1g54610 92 187 - -
Trre16g04600 548 MobiDBLite consensus disorder prediction 523 548 - -
Trre16g04600 548 MobiDBLite consensus disorder prediction 32 74 - -
Trre16g04600 548 PANTHER CELL DIVISION PROTEIN KINASE 103 393 - -
Trre16g04600 548 MobiDBLite consensus disorder prediction 32 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04600 Trre-Chr16 50497403 50500089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04600 100 427 Core Cell Cycle Gene Families AT5G10270 49.419 4.20e-111 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre16g04600 Pkinase 1.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04600 K08819 - gmx:100814207 871.692