Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04590 ATGGACTGCAACAAAGAAGAGGCCTTAAGGGCCAAGGCCATTGCTGAAAAGAAGATGGAAAGTAGGGATTTCGTGGCGGCTCGAAAGTTTGCTCTTAAGGCTCAGAAGCTGTATCCTGTTTTGGAAAACATAGCTCAAATGCTTGTTGTTTGTGATGTGCACTGCTCTGCTGAGCAGAAAGTGGTTGATGATGAGATTGATTGGTATGGAATTCTTCAGCTAGAACACACAGTTGGTGATGCAATGATTAAGAAGCAGTACCGAAAGTTTGCTCTTCAACTTCATCCCGATAAAAACAAGTTTTCTGGTGCAGAAGCTGCATTTAAGCTGATCGGAGAAGCTCAAAGAGTGCTTTTAGACAGAGAAAAACGAACTAGATATGACATGAAGCTTAAGGCGAAAAAAACTGCTATGCCACATCATAATCCACAGAAGGTTCCTGCGAATTTCAATTCTGCAATGAAAAATAATACCAAGCCCAATTATACAAACTCGAACACCCAGCAGCAGCAGCAGCAGCAGCAAAATAAGCAGCCCGCGCAACAGCAAAATGGTGAGCGCCGTACTTTTTGGACTGCTTGTCCGTTTTGTTCTGTGAAGTATCAGTACTACAGAGAAGTTTTAAATAAACCTCTTCGCTGTCAGCACTGCCATAAGCCATTCATTGCATATATTGTGGAAATACAAGGTACATCACAGACAACTAATTCAAGTCAGCAAGCTTCCAAGGAGAATGTTGGATCTCAAGGCAACTCGCATGCTGAGAAGTCCAATACAAACCCTTTCAAGAATAAAGTCCCGGTTGGTGTCTCTAGAAAGTCAAATGTGAAGAGAAACTGGAATCAAGTGGAAGAATGCAGTCAAAGCTCTGATTCTACAAGCGTCAGTGATTTTAGTGATTCTGAAATTGAAAGAGTGGGTGCTAAGTATGGTTTTCCAGGTGTAAGAAACCATTCAACTGAGCAGCAACGAAGATCTGTGCGACAGAAGCAAAAGGTTTCCTACAGTGATAATATGAGCAACAATGACAATGACTTATTAAGACCTTCAAAAAAGGGTCATGAGAATAGATCAGCTTGTGGTGATGGTCAAAGTCATGGTGGGAAAACTAAAACTAATGATCAGAATGGTGTAACAGCTGATCCAAAAGATGAACATGAAAAGGTAAAACAGAAACAGGATTTTCATTCTAACGAGAGCTCACTGGATAGAAATGAGGAAAAAAAGAGGACGAGTGGAAAAGAAGCTGTGGGAGGGTCAAAGCATATGGATGAAACTTTAGAGAATTCTTCTCCAAATTCAATGTGCAAGACAACAACTCTTCCTAATGCTTATCCCTATTTCAATGCAGAGTTCAGTGATTTTGATAAGGACAAAAAACAAGAATGTTTTGCACCTGGGCAGATTTGGGCTATCTATGATGCAACAGATGGCATGCCTAGATTATACGCTTTGATTAGAAAAGTTTTCTCTCCTGGATTTAAGTTGCAGGCAACATGGCTTGAACCACATCCAGATGACAAAGATGAAATCAAGTGGGTAGATGAGGAATTGCCCGTTGCTTGTGGGAAATTTAAACTTGGTGGCACCGATATCTTTGAAGATCATCAGCTGTTTTCTCATCTGGTTCAATGCGAAAGGATTGGCCGCAATACTTTTCATGTGTATCCTAGAAAGGGAGAAACGTGGGCTCTTCTTAAAAATTGGGATATCAAATGGTACATGGATGCGGAATCTCATAAGCAGTATGAATATGAGTTTGTTGAAATCCTGTCAGATTATGCCAATGGTGAGGGTGTATATGTTGGATACTTGGGTAAATTGAAAGGTTTTGTAAGCCTCTTCTTTCGAATTTTGAGAGAAGATAACAAGCCGTTTCAAATTCCATCCCTGGAGTTATTTAGATTCTCTCACATGGTTCCATCTTTCAAAATGACTGGTCAGGAAGGAGTTGGTGTTCATTTAGGATATTTAGAACTTGATCCTGCATCTTTACCAATGAATCTTGAAGAGATTGCTGTCCCTCAAAATTTGGATGCGAAGATTGGGCACAGTTCATGTGGCAGTGAGAATGCAAGATCTTCAAAAATATCAAAACCCTTGATGACCCCTGACAAAGTTATATCCACTCCCAAGTTTAATGTTGAAACAAGCAACATGACTGAGATAAAGGATTCTTTTGATGATATCGATGACAGCCATGCTTGTCCAGATTCAACCCCGGAAGCTTTTGAAATTCCAGATGCTCAGTTCTTCAATTTTGAAACTGGGAGGTCCCTTGATAAGTTCCAGATTGGTCAAATATGGGCATTTTACAGTGATGAGGATGAAATGCCAAAATACTATGGTCAGATTAAAGAAATTGAGACTAGCCCTGATCTTAAATTGCATGTTTATTGGCTCGCTTGCTGTTGGCTACCACAGAATACTATTAAATGGGAAGATGAACATATGCTTACTTCATGTGGAAGATTTAAAGTCATTAAAACAAATGATTTTCTCTCGACTTACAGTAACCTGTCTTGTATTTCACATCAAGTTCAAGCTGATGCCATTGGTAAGAATTATGCCATCTATCCGAAAAAAGGTGAAGTATGGGCTCTTTATAGGAATTGGTCGAACAAAATCAAGTGTTCTGACCTGAAAAATTGGGAGTATGACATAGTGGAAGTTCTTGAAGAAACTGATTTGTTTATAGAGACTTTAGTTTTAGAGAAGGTTAGTGGTTTTAGTTCTGTCTTCAGAGGCAAATCAAATGAAGGTTCTTCGGTCAGCCTGAGAATATCCAGAAAAGAATTGCTGAGATTCTCTCACCAAATTCCAGCTTTCAAACTGACAGAACAGCATGGCGGCAATCTGAGAGGCTTCTGGGAGCTTGATCCAGGAGCGGTACCACCTTCATTCCTATGGCCTTAG 2916 0.4002 MDCNKEEALRAKAIAEKKMESRDFVAARKFALKAQKLYPVLENIAQMLVVCDVHCSAEQKVVDDEIDWYGILQLEHTVGDAMIKKQYRKFALQLHPDKNKFSGAEAAFKLIGEAQRVLLDREKRTRYDMKLKAKKTAMPHHNPQKVPANFNSAMKNNTKPNYTNSNTQQQQQQQQNKQPAQQQNGERRTFWTACPFCSVKYQYYREVLNKPLRCQHCHKPFIAYIVEIQGTSQTTNSSQQASKENVGSQGNSHAEKSNTNPFKNKVPVGVSRKSNVKRNWNQVEECSQSSDSTSVSDFSDSEIERVGAKYGFPGVRNHSTEQQRRSVRQKQKVSYSDNMSNNDNDLLRPSKKGHENRSACGDGQSHGGKTKTNDQNGVTADPKDEHEKVKQKQDFHSNESSLDRNEEKKRTSGKEAVGGSKHMDETLENSSPNSMCKTTTLPNAYPYFNAEFSDFDKDKKQECFAPGQIWAIYDATDGMPRLYALIRKVFSPGFKLQATWLEPHPDDKDEIKWVDEELPVACGKFKLGGTDIFEDHQLFSHLVQCERIGRNTFHVYPRKGETWALLKNWDIKWYMDAESHKQYEYEFVEILSDYANGEGVYVGYLGKLKGFVSLFFRILREDNKPFQIPSLELFRFSHMVPSFKMTGQEGVGVHLGYLELDPASLPMNLEEIAVPQNLDAKIGHSSCGSENARSSKISKPLMTPDKVISTPKFNVETSNMTEIKDSFDDIDDSHACPDSTPEAFEIPDAQFFNFETGRSLDKFQIGQIWAFYSDEDEMPKYYGQIKEIETSPDLKLHVYWLACCWLPQNTIKWEDEHMLTSCGRFKVIKTNDFLSTYSNLSCISHQVQADAIGKNYAIYPKKGEVWALYRNWSNKIKCSDLKNWEYDIVEVLEETDLFIETLVLEKVSGFSSVFRGKSNEGSSVSLRISRKELLRFSHQIPAFKLTEQHGGNLRGFWELDPGAVPPSFLWP 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04590 971 MobiDBLite consensus disorder prediction 235 434 - -
Trre16g04590 971 PRINTS DnaJ domain signature 69 87 IPR001623 -
Trre16g04590 971 PRINTS DnaJ domain signature 103 123 IPR001623 -
Trre16g04590 971 PRINTS DnaJ domain signature 87 102 IPR001623 -
Trre16g04590 971 MobiDBLite consensus disorder prediction 274 300 - -
Trre16g04590 971 Pfam Domain of unknown function (DUF3444) 742 948 IPR024593 -
Trre16g04590 971 Pfam Domain of unknown function (DUF3444) 447 649 IPR024593 -
Trre16g04590 971 MobiDBLite consensus disorder prediction 363 377 - -
Trre16g04590 971 Pfam DnaJ domain 67 128 IPR001623 -
Trre16g04590 971 MobiDBLite consensus disorder prediction 133 184 - -
Trre16g04590 971 MobiDBLite consensus disorder prediction 332 346 - -
Trre16g04590 971 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 965 - -
Trre16g04590 971 MobiDBLite consensus disorder prediction 235 265 - -
Trre16g04590 971 SUPERFAMILY Chaperone J-domain 63 131 IPR036869 -
Trre16g04590 971 MobiDBLite consensus disorder prediction 378 422 - -
Trre16g04590 971 Gene3D DnaJ domain 53 155 IPR036869 -
Trre16g04590 971 CDD DnaJ 67 120 IPR001623 -
Trre16g04590 971 MobiDBLite consensus disorder prediction 145 184 - -
Trre16g04590 971 SMART dnaj_3 66 123 IPR001623 -
Trre16g04590 971 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04590 Trre-Chr16 50425011 50427926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04590 4 223 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.778 4.66e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04590 - - psat:127073362 1442.56