Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04587 ATGGGAAGGCACCGAAGCCGTAGCAGAAGTTACAGCCCTCGCCGGCGTAGCAGAACTCCACCACCTCGCGGTCGCAAGCGTTACGATGATGATCGCTATGCTGACACCAGGTCTCGCAGAGACCGTCGTTCTCCTTTTCCTTCTGGATTACTCGTTCGTAATCTCCCCCTTGATGCTAGACCTGAAGATCTTAGGGGACCATTTGAACGCTATGGTCCTGTGAAGGATGTTTACCTTCCTAGAAATTACTACACTGGTGAGCCTCGTGGCTTTGGATTTGTGAAATACCGACATGGTGAAGATGCAGCAGAGGCTAAGCAACAACTTAATCACACTATCATTGGTGGACGTGAAATAAGAATTGTGTTTGCTGAAGAAAATAGGAAGACACCTCAAGAAATGCGTGTTACTTCTCATGGAAGTGGTCGAAATGGAGGTGGTAGTAGAAGGAGAGCTCGGTCAAGATCCCCACGACGCCGTTATCGATCCTACTCTAGGTCTCCATCACCAGCCAGGGAGGATTCAAGAGGTAGGGATGATGATTATTCTCCAAAGCGATCAAGATCTTATTCTAGATCTGTCTCGCCTGGTGGCACCAAGGATGATAGAAGGTCCCCTCGTGCCAAGGACGACAGGAGGTCCCCTCATGCAAAGGATGACAGGAGATCCCCTCGTGCCAAGGACGACAGGAGGTCCCCTCGTGCCAAGGAAGACAGGAGGTCCCCTCATGCAAAGGATGACAGGAGATCCCCTCGTGCCAAGGAGAATGGCCACAGTCCAAATGATAAGAAGGATCGGGAACCTAGCAGATCTCAGAGTCCCAGGGGTAATGATCGCAGTCCTTCAAGGTCTCGTTCGCGGTCTTACAGTCCCCGCTGA 879 0.5131 MGRHRSRSRSYSPRRRSRTPPPRGRKRYDDDRYADTRSRRDRRSPFPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPRNYYTGEPRGFGFVKYRHGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRVTSHGSGRNGGGSRRRARSRSPRRRYRSYSRSPSPAREDSRGRDDDYSPKRSRSYSRSVSPGGTKDDRRSPRAKDDRRSPHAKDDRRSPRAKDDRRSPRAKEDRRSPHAKDDRRSPRAKENGHSPNDKKDREPSRSQSPRGNDRSPSRSRSRSYSPR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04587 292 Gene3D - 23 165 IPR012677 -
Trre16g04587 292 MobiDBLite consensus disorder prediction 166 187 - -
Trre16g04587 292 MobiDBLite consensus disorder prediction 1 49 - -
Trre16g04587 292 MobiDBLite consensus disorder prediction 1 22 - -
Trre16g04587 292 SUPERFAMILY RNA-binding domain, RBD 50 153 IPR035979 GO:0003676
Trre16g04587 292 MobiDBLite consensus disorder prediction 146 162 - -
Trre16g04587 292 SMART rrm1_1 49 122 IPR000504 GO:0003723
Trre16g04587 292 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 140 - -
Trre16g04587 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 126 IPR000504 GO:0003723
Trre16g04587 292 MobiDBLite consensus disorder prediction 197 273 - -
Trre16g04587 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 50 120 IPR000504 GO:0003723
Trre16g04587 292 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 280 - -
Trre16g04587 292 MobiDBLite consensus disorder prediction 23 46 - -
Trre16g04587 292 MobiDBLite consensus disorder prediction 126 292 - -
Trre16g04587 292 MobiDBLite consensus disorder prediction 274 292 - -
Trre16g04587 292 SMART rrm2_1 49 122 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04587 Trre-Chr16 50409968 50413588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04587 52 110 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 7.94e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04587 K12900 - gmx:100788749 254.218