Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g04562 ATGGGTTGTGTTCATGGCAAGTGTTGCTGTGTTGAAAATTCTTCATCTAATGGAGACTCTAGAAAACATGGTTTCCATCATAGCCATAGGAAGAATATACTTGCTCAGAGAGTATTGAAAAATGTTTCTGTTCCTTCCCATAACTTTGTTTTGGAATATACCTTTCTCACACTGCGAGGATACTACCCGGATTCGCTGGATAAACAGAACCAAGATAGTTTTTGCATTAGGACACAAATCCAAGGTAATCCTGATATCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAGTTTGGTAGTCAGTGTTCAAACTTTGTTAGGGATAGGTTGGTTGAAAAATTATCTAATGACCCTGCATTGGTGGAGGATCCTGTTCAAGCTTACAATTCTGCGTTCGCGGCAACAAATCATGAGTTGCATACTAGTGACATTGATGATGCTATGAGTGGTACAACGGCAATTACAGTGCTTGTTGTTGGAGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCTGTGATAGCTGTTAAGGATGGGGATCGGATTACTGCAGAGGACTTGTCGTCTGATCAGACACCATTTCGGAGAGATGAATATGAAAGAGTGAAACTTTGTGGAGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGATCAAAGATCCAAATATCCAGCATTGGGGTAACGAAGAGAGTTGGGATGGAGATCCTCCAAGATTGTGGCTTCCACATGGGATGTATCCTGGAACTGCATTTACAAGGAGTTTAGGGGATAGGTTGGCGGAGACAATTGGTGTGGTTGCTACTCCAGAGGTGTCAATTGTTCGACTTACACCTAATCATCTCTTCTTTGTTGTTGCTAGTGATGGGATATTTGAATTCTTGTCAAGCCAAACTGTTGTTGATATGACAGCGAGATATACAGATCCCCGTGATGCATGTGCCGCTATTACTGAAGAGTCATATAAACTATGGTTGGAACTTGTGAATCGAACAGATGATATAACAATTATCATTGTCCAGATTAAAGGACTTTCTAATTCAAGTACATCTGGAGTTGAATTAAGTGAGGTCAATGCTGCGACGGCAACGAGAACCAGGACAGGAATTTCGGATACATCTGCTACCACTGAATTTGATGTTTATCATTCTATGACAAACAGTTTCTCTGATTCACAATCCTGCCAGCATTGA 1194 0.4129 MGCVHGKCCCVENSSSNGDSRKHGFHHSHRKNILAQRVLKNVSVPSHNFVLEYTFLTLRGYYPDSLDKQNQDSFCIRTQIQGNPDIHFFGVFDGHGQFGSQCSNFVRDRLVEKLSNDPALVEDPVQAYNSAFAATNHELHTSDIDDAMSGTTAITVLVVGDTLYVANVGDSRAVIAVKDGDRITAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGIKDPNIQHWGNEESWDGDPPRLWLPHGMYPGTAFTRSLGDRLAETIGVVATPEVSIVRLTPNHLFFVVASDGIFEFLSSQTVVDMTARYTDPRDACAAITEESYKLWLELVNRTDDITIIIVQIKGLSNSSTSGVELSEVNAATATRTRTGISDTSATTEFDVYHSMTNSFSDSQSCQH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g04562 397 ProSitePatterns PPM-type phosphatase domain signature. 88 96 IPR000222 GO:0043169
Trre16g04562 397 Gene3D - 51 344 IPR036457 -
Trre16g04562 397 PANTHER PROTEIN PHOSPHATASE 70 341 IPR015655 GO:0004722|GO:0006470
Trre16g04562 397 SMART PP2C_4 48 340 IPR001932 -
Trre16g04562 397 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 47 344 - -
Trre16g04562 397 SUPERFAMILY PP2C-like 40 344 IPR036457 -
Trre16g04562 397 ProSiteProfiles PPM-type phosphatase domain profile. 52 342 IPR001932 -
Trre16g04562 397 Pfam Protein phosphatase 2C 71 320 IPR001932 -
Trre16g04562 397 CDD PP2Cc 68 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g04562 Trre-Chr16 50226630 50229183 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g04562 1 347 PP2C-type Phosphatase Gene Family AT3G06270 69.164 9.35e-177 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g04562 - - gmx:100797866 630.172